XLOC_001996 (apba1b)


Basic Information

Item Value
gene id XLOC_001996
gene name apba1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15777064 ~ 15813279 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003895
TctgaacatattaataaaaatatgtatttgtgcaaaaaaaagtgTAACCGAGTCAAAAGTAGCAGACAGATGGTGCGATCTGTAGTGGGATGGTTTGGGGGCAGGGAGGGTATTTACTGGTGTATAATCCGCTCTGATGTCACTGTATGCCGAAGGAGGGGTCTGAGATCCGCCGCTCCGCTCGCTTTAATCCCACTGTTGATAAGAACAACCGACGGAGATGAAGGCGAGCCGAGCAGGCTTTCTCCAGCGATGCTTTTCATAACAGgCAGTTCAGCAGCATCTAGACAATGAGCAGTGAGTGGGTGGAGCCATGAGCCATAGGGAGGAGCCAGAGGAGGCAGGCCTCAGAGGACCTCCCCCTCATCGCAGCAAGCAGCCCAATGGGACTCCTTTAGAGGGGGGCCGTCCCAGATGGAGGCCATGCCAGCTGCACAATCCCGATGCAGAAAGCCAAGGCCAGCACCATCATCACTATCATCACCAAGCCCACCAGCATGCGTCTGGATCTAGTCGAGCTCCACCACGTCATCGTAGGCGGCATGTTCCTGGTCAAGCACAACGCAGGCGGCCCGAGAGTGGAGATTCAGAAGCTAGAGCTGGCCAGCAACCCAAACCGGGGGCGTCAAAACACCATCGAAGTGGAGAGAGACTCTATCAGCACAGATACAGACAACAGCACAAAGATGAAGAACAACATGTCAAAACTCCTCCAAAAGAGCAAGCTTCAGAGCCATTGTTATCTCCAGATGATTCTTCTCAAGACTTGCTGACCCCTTCTCCTCAGGATGAACCAGTCACTGACGAACTGGATGAGAGCAGTCCAGATTTGTCCCATTCATCTGATACACAGATTAATCGTGATCCAGAACAAGAACAGGCAGAGTCTTCAGTGGATCAGCCGGAGGAGAATGTCCACCGTGAAGAATTCAAGAATCCATGTGAAGAGGAATTAGTAAAAGTGAACGAAGTTGAGGACTTATCCACACAGATTCCTGAGGAAGATTATGTCCCACCTAAGATTGCTTCAAAAAGTCGACCTGAAAGTAAAAGAACTAGTCCTCTACGAGTAGATGTCCCACCATTTGCCACATCTCCTCACCAGATTATCAACAAACCTTTTTTTCAGTCTCCACGAAGCTTCCCTGAGAGTCTTCGAAGGTACAATTCTGATCCGAAGTCATACCCTACCTTTTTCAACAATAATTATGCTTGTACAAGAAATGATAAAGAGTTTGATAGTCCTAGATCCCACGATGAAGGTGACCTCTCAGACTCTGAAGCCTATACAGATTCTTACCCAGAGTCTCATCCTAAAGACACAGAAACAGACCTTAACCCAGCCTTTGAAGAACCTCAAGCATATGAGATGAACTACAGCATGTCAATGGATGAATGCGATGACCAGCAGGATCTAGAGGAAGAGCCTAATCCACATAGTGCAGTGGGCTCCAGACTCCACCACTACGATGAGCAATCAGGAGATGAAGCTGAAAGTTTCGGCAGAAGCAGAGCCCATCTCAGGAAGACATCAAGCTCAACTAGCCTTCCATTGGAAGTTCATCCCCAAGATGACGAGACATCAGAAATGACTCAAAATTCAACAGACTTGCAGGAAGAAGTTGAGGACGTACCTGAAAAGCAAGATCAAATAACTGAGTCTTGCAAAGCTACGGGCGACGCTGTGTCTTTGGCCATCAGGGATATTAAGGAAGCCATCGAAGAGGTGAAGACCAAGACTGTGCGTTCACCCTACATGCCTGACAAGATCACTGAGCCGGTGTGGGTGATGAGACAAGACGTGAGCCCTGTTGAGGAGAGCCATCCTCAGATTCACTCATACCCACAATCTCCATGCCAGATATCGCAGTCTTCTCCACAGTATGCGGCTCCAATTCAAGATGCTGAACCTCCTTTAGGAGCAGAATCCTCTGGAGTGCTTCATCAGGACCAGGATCAGGAGCTCTGTCCTAATGTGCCAAGTGAAGAGCAAAGGAAAAGTTTGGCCTCTTTTCCTACATATGTGGATGTTCCTGGCCCTTGTGATCCTGAAGATTTGATCGACGGCATCATTTTTGCTGCAAACTACCTGGGTTCCACCCAACTGCTGTCAGAGAGAACGCCCACAAAGAGCGCCCGCATGCAGCAAGCCCAGGAGGCCATGAGCCGCGTCCGGACAGCGCAGGCACAGGCTAAAATCAGAAACAAGCAGGGCACTGAGAGTGGGCCGCCGTCCTGCACAGAAGTGGACCTCTTCATTTCAACACAGAGGATCAAAGTGCTCAGCGCTTACACACAGGACACCATGATGGACCATCCTCTGAGGACCATCTCGTACATCGCAGACATCGGGAACATGGTTGTGCTGATGGCTCGCAGGAAGATGATCCGCTCTCAAAGCGCACAGGAAAACCTGGACACCGCCGAGACGCAACACACAAACCCAGCTCGAGACGACCGGCGCCAGTACAAGATGATCTGCCATGTCTTCGAGTCAGAAGATGCTCAGCTGATCGCTCAGTCCATCGGCCAGGCCTTCAGTGTGGCGTATCAGGAGTTTCTGAGGGCCAATGGCATCGATCCAGAAGACCTGAGCCAGAGAGAGTACAGCGACCTGCTCAACACTCAGGACATGTACAACGACGACCTCATTCACTTCTCCAAGTCTGAAAACTGCAGAGATGTGTACATCGAGAAGCAGAAGGGGGAGATTCTGGGTGTGGTGATTGTGGAGTCTGGCTGGGGCTCCATCCTGCCCACCGTCATCATCGCCAGCCTGATGCACGGTGGACCCGCAGCCAAATCCGGAAGACTCAACATCGGAGATCAAATCATGACCGTCAACGGCACCAGTTTGGTCGGACTGCCGCTCTCCACCTGCCAGAGCATCATTAAAGGTCTCAAGTCTCAATCCAGGATCAAGATGAACATCGTCAGGTGTCCTCCTGTGACCATGGTGCTCATTCGCAGACCAGACCTTCGCTATCAGCTGGGCTTCAGTGTACAGAATGGCATTATCTGCAGCCTCATGCGAGGGGGGATTGCGGAGAGAGGAGGCGTTCGTGTCGGTCATCGGATCATCGAGATCAATGGTCAGAGTGTCGTGGCCACACCACACGAGAAGATCGTCCACATCCTGTCAAACGCTGTCGGAGAGATCCATATGAAGACGATGCCGGCCGCCATGTACCGTCTGCTCACGGCCCAGGAACAGCCTGTCTACATCTGA
>TCONS_00003896
ACTGTTGATAAGAACAACCGACGGAGATGAAGGCGAGCCGAGCAGGCTTTCTCCAGCGATGCTTTTCATAACAGgCAGTTCAGCAGCATCTAGACAATGAGCAGTGAGTGGGTGGAGCCATGAGCCATAGGGAGGAGCCAGAGGAGGCAGGCCTCAGAGGACCTCCCCCTCATCGCAGCAAGCAGCCCAATGGGACTCCTTTAGAGGGGGGCCGTCCCAGATGGAGGCCATGCCAGCTGCACAATCCCGATGCAGAAAGCCAAGGCCAGCACCATCATCACTATCATCACCAAGCCCACCAGCATGCGTCTGGATCTAGTCGAGCTCCACCACGTCATCGTAGGCGGCATGTTCCTGGTCAAGCACAACGCAGGCGGCCCGAGAGTGGAGATTCAGAAGCTAGAGCTGGCCAGCAACCCAAACCGGGGGCGTCAAAACACCATCGAAGTGGAGAGAGACTCTATCAGCACAGATACAGACAACAGCACAAAGATGAAGAACAACATGTCAAAACTCCTCCAAAAGAGCAAGCTTCAGAGCCATTGTTATCTCCAGATGATTCTTCTCAAGACTTGCTGACCCCTTCTCCTCAGGATGAACCAGTCACTGACGAACTGGATGAGAGCAGTCCAGATTTGTCCCATTCATCTGATACACAGATTAATCGTGATCCAGAACAAGAACAGGCAGAGTCTTCAGTGGATCAGCCGGAGGAGAATGTCCACCGTGAAGAATTCAAGAATCCATGTGAAGAGGAATTAGTAAAAGTGAACGAAGTTGAGGACTTATCCACACAGATTCCTGAGGAAGATTATGTCCCACCTAAGATTGCTTCAAAAAGTCGACCTGAAAGTAAAAGAACTAGTCCTCTACGAGTAGATGTCCCACCATTTGCCACATCTCCTCACCAGATTATCAACAAACCTTTTTTTCAGTCTCCACGAAGCTTCCCTGAGAGTCTTCGAAGGTACAATTCTGATCCGAAGTCATACCCTACCTTTTTCAACAATAATTATGCTTGTACAAGAAATGATAAAGAGTTTGATAGTCCTAGATCCCACGATGAAGGTGACCTCTCAGACTCTGAAGCCTATACAGATTCTTACCCAGAGTCTCATCCTAAAGACACAGAAACAGACCTTAACCCAGCCTTTGAAGAACCTCAAGCATATGAGATGAACTACAGCATGTCAATGGATGAATGCGATGACCAGCAGGATCTAGAGGAAGAGCCTAATCCACATAGTGCAGTGGGCTCCAGACTCCACCACTACGATGAGCAATCAGGAGATGAAGCTGAAAGTTTCGGCAGAAGCAGAGCCCATCTCAGGAAGACATCAAGCTCAACTAGCCTTCCATTGGAAGTTCATCCCCAAGATGACGAGACATCAGAAATGACTCAAAATTCAACAGACTTGCAGGAAGAAGTTGAGGACGTACCTGAAAAGCAAGATCAAATAACTGAGTCTTGCAAAGCTACGGGCGACGCTGTGTCTTTGGCCATCAGGGATATTAAGGAAGCCATCGAAGAGGTGAAGACCAAGACTGTGCGTTCACCCTACATGCCTGACAAGATCACTGAGCCGGTGTGGGTGATGAGACAAGACGTGAGCCCTGTTGAGGAGAGCCATCCTCAGATTCACTCATACCCACAATCTCCATGCCAGATATCGCAGTCTTCTCCACAGTATGCGGCTCCAATTCAAGATGCTGAACCTCCTTTAGGAGCAGAATCCTCTGGAGTGCTTCATCAGGACCAGGATCAGGAGCTCTGTCCTAATGTGCCAAGTGAAGAGCAAAGGAAAAGTTTGGCCTCTTTTCCTACATATGTGGATGTTCCTGGCCCTTGTGATCCTGAAGATTTGATCGACGGCATCATTTTTGCTGCAAACTACCTGGGTTCCACCCAACTGCTGTCAGAGAGAACGCCCACAAAGAGCGCCCGCATGCAGCAAGCCCAGGAGGCCATGAGCCGCGTCCGGCAGGGCACTGAGAGTGGGCCGCCGTCCTGCACAGAAGTGGACCTCTTCATTTCAACACAGAGGATCAAAGTGCTCAGCGCTTACACACAGGACACCATGATGGACCATCCTCTGAGGACCATCTCGTACATCGCAGACATCGGGAACATGGTTGTGCTGATGGCTCGCAGGAAGATGATCCGCTCTCAAAGCGCACAGGAAAACCTGGACACCGCCGAGACGCAACACACAAACCCAGCTCGAGACGACCGGCGCCAGTACAAGATGATCTGCCATGTCTTCGAGTCAGAAGATGCTCAGCTGATCGCTCAGTCCATCGGCCAGGCCTTCAGTGTGGCGTATCAGGAGTTTCTGAGGGCCAATGGCATCGATCCAGAAGACCTGAGCCAGAGAGAGTACAGCGACCTGCTCAACACTCAGGACATGTACAACGACGACCTCATTCACTTCTCCAAGTCTGAAAACTGCAGAGATGTGTACATCGAGAAGCAGAAGGGGGAGATTCTGGGTGTGGTGATTGTGGAGTCTGGCTGGGGCTCCATCCTGCCCACCGTCATCATCGCCAGCCTGATGCACGGTGGACCCGCAGCCAAATCCGGAAGACTCAACATCGGAGATCAAATCATGACCGTCAACGGCACCAGTTTGGTCGGACTGCCGCTCTCCACCTGCCAGAGCATCATTAAAGGTCTCAAGTCTCAATCCAGGATCAAGATGAACATCGTCAGGTGTCCTCCTGTGACCATGGTGCTCATTCGCAGACCAGACCTTCGCTATCAGCTGGGCTTCAGTGTACAGAATGGCATTATCTGCAGCCTCATGCGAGGGGGGATTGCGGAGAGAGGAGGCGTTCGTGTCGGTCATCGGATCATCGAGATCAATGGTCAGAGTGTCGTGGCCACACCACACGAGAAGATCGTCCACATCCTGTCAAACGCTGTCGGAGAGATCCATATGAAGACGATGCCGGCCGCCATGTACCGTCTGCTCACGGCCCAGGAACAGCCTGTCTACATCTGAACCATCTACCTGATCCAGAGTTCTTATTATTTATAGAGATATTAATATAActgtttacagatttatttaactgGATGTACGTATTTATTATTCCATTACTAGTGCATAAAGCAAAAACCATTCCAGCCACATGTGACCTGCCTTAATCTCTATGGGTCTGCGATGATCTCATCATTTCACCGGCATCAGTTCAACGCGTTCAGACGTACCAAAGAGACACGAATGATGACATGGACCTACATTACAAGAGATCAACGGCATTAACATTAGTGTAACCAATAACATGTGCATCTGCTGTCATAATTCAAAGTAAAGGAATCAATGAATTAAATA
>TCONS_00003897
ATATAACAAGACTATTGGCTAACATTCAGTGAATTTAGCCATAGACAGAGTGGTTTACTTCTAGAATGAtcgataaccattgacttccatagtattttttccacCGTTTTAAGGAAGTCAATGCTGACCCTCGACTGTTCTGATACCAGCATGTCCTGTGAGCCCTGCCTCTTTGTTTGTGTCAGGTGTACATCGAGAAGCAGAAGGGGGAGATTCTGGGTGTGGTGATTGTGGAGTCTGGCTGGGGCTCCATCCTGCCCACCGTCATCATCGCCAGCCTGATGCACGGTGGACCCGCAGCCAAATCCGGAAGACTCAACATCGGAGATCAAATCATGACCGTCAACGGCACCAGTTTGGTCGGACTGCCGCTCTCCACCTGCCAGAGCATCATTAAAGGTCTCAAGTCTCAATCCAGGATCAAGATGAACATCGTCAGGTGTCCTCCTGTGACCATGGTGCTCATTCGCAGACCAGACCTTCGCTATCAGCTGGGCTTCAGTGTACAGAATGGCATTATCTGCAGCCTCATGCGAGGGGGGATTGCGGAGAGAGGAGGCGTTCGTGTCGGTCATCGGATCATCGAGATCAATGGTCAGAGTGTCGTGGCCACACCACACGAGAAGATCGTCCACATCCTGTCAAACGCTGTCGGAGAGATCCATATGAAGACGATGCCGGCCGCCATGTACCGTCTGCTCACGGCCCAGGAACAGCCTGTCTACATCTGAACCATCTACCTGATCCAGAGTTCTTATTATTTATAGAGATATTAATATAActgtttacagatttatttaactgGATGTACGTATTTATTATTCCATTACTAGTGCATAAAGCAAAAACCATTCCAGCCACATGTGACCTGC

Function

symbol description
apba1b Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to be active in cytoplasm; dendritic spine; and plasma membrane. Orthologous to human APBA1 (amyloid beta precursor protein binding family A member 1).

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005737 cytoplasm cellular_component
GO:0001540 amyloid-beta binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070925-3 Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to be active in cytoplasm; dendritic spine; and plasma membrane. Orthologous to human APBA1 (amyloid beta precursor protein binding family A member 1).

Ensembl:

ensembl_id ENSDARG00000074328

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003895 False 3229 mRNA 0.51 13 15777064 15812946
TCONS_00003896 False 3335 mRNA 0.50 12 15777258 15813279
TCONS_00003897 True 872 lncRNA 0.49 4 15802941 15813087

Neighbor

gene id symbol gene type direction distance location
XLOC_001995 NA coding upstream 94593 15682165 ~ 15682471 (+)
XLOC_001994 zfand5b coding upstream 163762 15603082 ~ 15613302 (+)
XLOC_001993 erbin coding upstream 177915 15454745 ~ 15599149 (+)
XLOC_001992 nln coding upstream 325847 15408501 ~ 15451217 (+)
XLOC_001991 trappc13 coding upstream 394939 15340768 ~ 15382125 (+)
XLOC_001997 NA coding downstream 124027 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b coding downstream 141300 15954579 ~ 15954659 (+)
XLOC_001999 dre-mir-27d coding downstream 141448 15954727 ~ 15954815 (+)
XLOC_002000 dre-mir-24-1 coding downstream 147556 15960835 ~ 15960914 (+)
XLOC_002001 apbb1 coding downstream 154062 15967341 ~ 15997914 (+)
XLOC_001985 NA non-coding upstream 680802 15096017 ~ 15096262 (+)
XLOC_001983 NA non-coding upstream 688538 15087993 ~ 15088526 (+)
XLOC_001981 NA non-coding upstream 728282 15047006 ~ 15048782 (+)
XLOC_001980 NA non-coding upstream 734316 15036271 ~ 15042748 (+)
XLOC_002008 NA non-coding downstream 561581 16374860 ~ 16396280 (+)

Expression


Co-expression Network