XLOC_002008


Basic Information

Item Value
gene id XLOC_002008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16374860 ~ 16396280 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005847
TGAAGCCCATCTCACATTCACAGCGATAGCTGCCAGGAACATTTAGACACTGGCCATTTTCACACAGATCCACATCTTCAGCGCATTCATCCAAATCTGCAGGACAGCCAGACATTTAAATGTGTGAACATCTTCAGTTAGAGAACCAAGGCTTGTATGATaCTGTGAGATGAAACGTTGGTTACGTATGTAACCGTGGTTCTGTGAATTCCGGATGACTGCCAGAGACTGCGTTTACACAGTGGATAATCGCAGTGCCAGCTGCCGAGGAACAACATACCAACAAAGTCACATGGTGACGCAAGGTAAACTGAGGAGCAATCTCCGACTGACGTTCCTGAGCCTGTTGACCAACCTG
>TCONS_00005848
TGAAGCCCATCTCACATTCACAGCGATAGCTGCCAGGAACATTTAGACACTGGCCATTTTCACACAGATCCACATCTTCAGCGCATTCATCCAAATCTGCAGGACAGCCAGACATTTAAATGTGTGAACATCTTCAGTTAGAGAACCAAGGCTTGTATGATaCTGTGAGATGAAACGTTGGTTACGTATGTAACCGTGGTTCTGTGAATTCCGGATGACTGCCAGAGACTGCGTTTACACAGTGGATAATCGCAGTGCCAGCTGCCGAGGAACAACATACCAACAAAGTCACATGGTGACGCAAGGTAAACTGAGGCTCTTGTCGTTGAATCGTTGGTGGTGAGTGAGCTGGAAGAGTTTTATGCCGTTGGATTTTTGATCTTCTCTGTTGATGACTTCATTGGACTTTTGATCTTCTCTGTTGACGGCTGCTCGAACTTGCATCAGCCCTAGAACTTTTTATTGGATTCACTCACTTCCTGAGATACTCACCTGACATCTACCAGCAAACAACTTATCAGCTCTGTGTCTTGTTGATCATAATAAACACTGTTACTTGC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005847 False 358 lncRNA 0.47 3 16374860 16377236
TCONS_00005848 True 560 lncRNA 0.44 3 16374860 16396280

Neighbor

gene id symbol gene type direction distance location
XLOC_002007 slc12a2 coding upstream 64681 16225117 ~ 16310179 (+)
XLOC_002006 ctxn3 coding upstream 182247 16188761 ~ 16192613 (+)
XLOC_002005 prrc1 coding upstream 187060 16165533 ~ 16187800 (+)
XLOC_002004 megf10 coding upstream 213820 16069987 ~ 16161040 (+)
XLOC_002003 lmnb1 coding upstream 317952 16036246 ~ 16056908 (+)
XLOC_002009 slc27a6 coding downstream 105419 16501699 ~ 16540603 (+)
XLOC_002010 isoc1 coding downstream 150979 16547259 ~ 16563953 (+)
XLOC_002011 CR790388.2 coding downstream 178798 16575078 ~ 16575175 (+)
XLOC_002012 CR790388.1 coding downstream 188102 16584382 ~ 16587854 (+)
XLOC_002013 chsy3 coding downstream 196571 16592851 ~ 16748593 (+)
XLOC_002000 dre-mir-24-1 non-coding upstream 413946 15960835 ~ 15960914 (+)
XLOC_001999 dre-mir-27d non-coding upstream 420045 15954727 ~ 15954815 (+)
XLOC_001998 dre-mir-23b non-coding upstream 420201 15954579 ~ 15954659 (+)
XLOC_001997 NA non-coding upstream 421390 15937306 ~ 15953470 (+)
XLOC_001995 NA non-coding upstream 692389 15682165 ~ 15682471 (+)
XLOC_002017 NA non-coding downstream 690974 17087254 ~ 17087788 (+)
XLOC_002019 BX324123.6 non-coding downstream 723637 17119917 ~ 17120049 (+)
XLOC_002020 BX324123.5 non-coding downstream 727088 17123368 ~ 17123500 (+)
XLOC_002021 BX324123.3 non-coding downstream 729060 17125340 ~ 17125466 (+)

Expression


Co-expression Network