RNA id: TCONS_00005847


Basic Information

Item Value
RNA id TCONS_00005847
length 358
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id XLOC_002008
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16374860 ~ 16396280 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAGCCCATCTCACATTCACAGCGATAGCTGCCAGGAACATTTAGACACTGGCCATTTTCACACAGATCCACATCTTCAGCGCATTCATCCAAATCTGCAGGACAGCCAGACATTTAAATGTGTGAACATCTTCAGTTAGAGAACCAAGGCTTGTATGATaCTGTGAGATGAAACGTTGGTTACGTATGTAACCGTGGTTCTGTGAATTCCGGATGACTGCCAGAGACTGCGTTTACACAGTGGATAATCGCAGTGCCAGCTGCCGAGGAACAACATACCAACAAAGTCACATGGTGACGCAAGGTAAACTGAGGAGCAATCTCCGACTGACGTTCCTGAGCCTGTTGACCAACCTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003912 lncRNA upstream 278487 16070017 ~ 16096373 (+) False XLOC_002004
TCONS_00003904 lncRNA upstream 381598 15986197 ~ 15993262 (+) True XLOC_002001
TCONS_00005844 lncRNA upstream 421390 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA upstream 421390 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00005846 lncRNA upstream 421390 15937765 ~ 15953470 (+) True XLOC_001997
TCONS_00005696 lncRNA downstream 710018 17087254 ~ 17087788 (+) True XLOC_002017
TCONS_00005697 lncRNA downstream 720767 17098003 ~ 17100587 (+) True XLOC_002018
TCONS_00005849 lncRNA downstream 858041 17235277 ~ 17243055 (+) False XLOC_002023
TCONS_00005698 lncRNA downstream 858066 17235302 ~ 17243055 (+) False XLOC_002023
TCONS_00005850 lncRNA downstream 884249 17261485 ~ 17262255 (+) True XLOC_002024
TCONS_00003919 mRNA upstream 64681 16225117 ~ 16310179 (+) False XLOC_002007
TCONS_00003921 mRNA upstream 67943 16225870 ~ 16306917 (+) True XLOC_002007
TCONS_00003920 mRNA upstream 110536 16225553 ~ 16264324 (+) False XLOC_002007
TCONS_00003917 mRNA upstream 182247 16188761 ~ 16192613 (+) False XLOC_002006
TCONS_00003918 mRNA upstream 182247 16190973 ~ 16192613 (+) True XLOC_002006
TCONS_00003922 mRNA downstream 124463 16501699 ~ 16540603 (+) True XLOC_002009
TCONS_00003923 mRNA downstream 170023 16547259 ~ 16563953 (+) True XLOC_002010
TCONS_00003925 mRNA downstream 207146 16584382 ~ 16587854 (+) True XLOC_002012
TCONS_00003926 mRNA downstream 215615 16592851 ~ 16703733 (+) False XLOC_002013
TCONS_00003927 mRNA downstream 215682 16592918 ~ 16748593 (+) True XLOC_002013
TCONS_00003910 other upstream 334652 16036907 ~ 16040208 (+) True XLOC_002003
TCONS_00003900 other upstream 413946 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003899 other upstream 420045 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003898 other upstream 420201 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003893 other upstream 769717 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003924 other downstream 197842 16575078 ~ 16575175 (+) True XLOC_002011
TCONS_00003933 other downstream 742681 17119917 ~ 17120049 (+) True XLOC_002019
TCONS_00003934 other downstream 746132 17123368 ~ 17123500 (+) True XLOC_002020
TCONS_00003935 other downstream 748104 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003936 other downstream 750080 17127316 ~ 17127448 (+) True XLOC_002022

Expression Profile

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