RNA id: TCONS_00003921


Basic Information

Item Value
RNA id TCONS_00003921
length 3390
RNA type mRNA
GC content 0.50
exon number 26
gene id XLOC_002007
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16225117 ~ 16310179 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCACCATGTCGGCGTCACCTCCAATCTCCGCGGGCGATTATCTCTCTGCGCCCGAACCTGATGCGCTTAAACCCGCCGGTCCGACTCCGAGCCAGAGCCGCTTCCAGGTGGATCTGGTGACAGAGTCCGCAGGGGACGGTGAAACCACTGTCGGCTTCGACTCATCCCCACCCGAGTACGTTGCCGAGCCGCCGCCCGATGGGCTCCGGGATTCAGTATCTGGCGGCGAGGAAGCCAAGGGCCGGTTTCGGGTTGTGAACTTTGCGGCCTCAAGTCCGGACGCCGCGCCGGCGGAAACCGCGCAGAACGGGGACACGGTGATGAGCGAGGGCAGTTTGCACTCCTCCACCGGCGGCCAGCAGCACCATCACTACGATACACACACCAACACCTACTACCTCCGTACGTTCGGACACAACACCATCGACGCCGTGCCCAAGATCGACTTCTACCGGCAGACCGCCGCTCCGCTGGGCGAGAAACTCATTAGACCCACCCTCTCAGAACTGCACGACGAGCTGGACAAGGAGCCATTTGAGGATGGGTTTGCTAACGGCGAGGAGTTGACCCCTGCCGAGGAGTCTGCAGCTAAAGATGTATCAGAGTCTAAAGGAGTGGTGAAGTTCGGATGGATCAAGGGCGTGCTGGTGCGCTGCATGTTAAACATATGGGGTGTGATGCTCTTCATTCGAATGACATGGATCGTGGGCCAGGCTGGAATTGCATATTCCTGTATCATTGTTATTATGGCAACTGTTGTGACAACCATCACAGGCTGCTCGACTTCTGCGATTGCAACTAATGGCTTTGTACGAGgagGTGGAGCATATTACTTAATATCTCGAAGTCTGGGTCCAGAGTTTGGTGGCTCCATTGGTCTCATTTTTGCCTTTGCCAATGCTGTTGCTGTAGCCATGTATGTTGTGGGTTTTGCCGAAACTGTTGTTGAGCTACTCATGgACTCTGGTCTATTAATGATCGATCAAACAAATGACATCAGAGTCATTGGGACCATTACAGTCATTCTGCTTCTCGGCATTTCAGTGGCTGGAATGGAGTGGGAAGCCAAGGCCCAGATATTCCTATTGGTCATATTGATTACTGCCATTTTCAACTACTTCATTGGGTCCTTCATTGCTGTTGACTCGAAGAAGAAATTTGGCTTCTTTAGTTATGATGCTGGCATCTTGGCGGAAAATTTTGGTCCAGACTTTCGAGGACAGACGTTTTTCTCTGTTTTTTCCATCTTCTTCCCAGCAGCCACAGGCATTTTGGCTGGTGCCAACATCTCAGGAGATCTAGCAGACCCTCAAATGGCCATCCCAAAAGGAACGCTTTTGGCTATTCTCATAACAGGCCTTGTGTACGTGGGTGTGGCCATTTCTGCAGGTGCTTGCATCGTGCGTGATGCTACAGGAATCGAGAGTAACTTTACTCTCATTTCAAACTGTACTGATGCAGCCTGTAAGTATGGCTATGACTTCAGTTCCTGCAGACCTACGGTTGAAGGAGAAGTATCTTCCTGCAAGTTTGGTCTTCACAATGATTTCCAGGTTATGAGCGTGGTGTCAGGCTTCAGTCCTCTTATCAGTGCTGGGATTTTCTCTGCCACACTTTCCTCTGCCCTGGCATCTCTCGTCAGTGCCCCAAAAGTGTTTCAGGCTTTATGCAAAGACAATATCTATCCTGGAATTGCAATTTTTGGAAAGGGCTATGGCAAGAACAACGAGCCCCTGCGAGGATATTTTCTTACCTTTGGCATTGCGTTAGCTTTCATTCTAATTGCGGAGTTGAACGTCATTGCCCCAATCATTTCCAACTTTTTCCTGGCATCATACGCTCTCATCAACTTCTCGGTGTTTCACGCTTCGCTGGCCAATTCCCCTGGATGGAGGCCAAGCTTCAAGTACTACAACATGTGGGCGTCTCTGGCCGGGGCAATCCTATGTTGTGTTGTCATGTTTATCATCAATTGGTGGGCAGCGCTTTTGACCAACGTCATTGTCTTATCCCTTTACATCTACGTCAGCTACAAAAAACCAGATGTGAATTGGGGTTCGTCAACTCAAGCTCTGACGTATCATCAGGCCTTAACACACAGTTTACAGCTGTGCGGAGTAGCTGACCACATTAAAACCTTCAGGCCACAGTGTCTGGTGATGACTGGGGCTCCAAACTCGCGTCCAGCTATTCTTCATCTGGTCCATGCCTTCACCAAAAATGTGGGGCTGATGTTATGTGGGCATGTGCGCATTAGTTCTCGACGGCCCAACTTCAAAGAGCTAAACAGCGATATGTTGCGTTACCAGAGGTGGCTCCTTAACAACAACTCCAAGGCCTTTTACACATGTGTCGTTGCTGAAGACCTCCGTCAAGGAACCCAGTACatgctgcaggcTGCTGGACTGGGTAGATTGAGGCCCAATACTCTGGTTATTGGTTTCAAAAATGACTGGCGCACTGGAGACATAAAGGAGGTTGAGACCTACATAAACCTAATACAtgaTGCGTTTGATTTTCAGTATGGTGTTGTCATTCTCAGACTGCGAGAGGGACTTGATATTTCTCACATTCAAGGTCAAGATGATTCTTCAGGTATGAAGGATGTGGTGGTTTCAGTGGACATAAGCAAAGACTCGGATGGAGACTCATCCAAACCCTCCTCCAAGGCCACCAGTGTTCAGAACAGCCCAGCGGTCCAGAAAGATAAAAAGAGCCCGACAGTTCCTCTAAATGTAGCTGATCAGAGGTTGTTGGATGCCAGTCAACAGTTTCAGCAGAAACAGGGGAAGGGGACAGTGGATGTGTGGTGGCTCTTTGATGACGGGGGTCTGACTCTACTGATCCCCTATCTTATCGCCAACAAGAAGAAATGGAAGGACTGTAAGATCCGCGTGTTCATCGGTGGGAAGATCAACAGAATAGACCATGACCGCAGAGCCATGGCCACCTTGCTCAGCAAGTTCAGGATCGATTTCTCTGACATCACAGTCCTTGGTGACATCAACACAAAGCCAAAGTCTGAGGGTTTGACAGAGTTTGCTGAAATGATCGAGCCATATAAACTGAGAGAAGATGACATGGAGCAGGAAGCTGCTGAGAAGCTGAAAAGCGAGGAACCCTGGAGGATCACAGACAATGAGCTGGAGCTCTACAAAGCCAAGgGTAACCGTCAGATCAGACTGAATGAGCTGTTGAAGGAGCACTCAAGCACAGCCAACCTCATTGTCATGAGTATGCCGCTGGCCAGGAAAGGAGCCGTCTCCAGTGCCCTTTATATGGCCTGGCTAGACACACTATCCAAAGACCTGCCGCCCATCCTCTTAGTGCGCGGGAACCATCAGAGCGTCCTCACGTTCTACTCTTAAAGAGCTCACAGACACAACTGC

Function

GO:

id name namespace
GO:0006884 cell volume homeostasis biological_process
GO:0043583 ear development biological_process
GO:0048798 swim bladder inflation biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0055064 chloride ion homeostasis biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0015696 ammonium transport biological_process
GO:0006811 ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008511 sodium molecular_function
GO:0008519 ammonium transmembrane transporter activity molecular_function
GO:0015377 cation molecular_function
GO:0015378 sodium molecular_function
GO:0015379 potassium molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04970 Salivary secretion
ko04972 Pancreatic secretion
ko05110 Vibrio cholerae infection
ko01009 Protein phosphatases and associated proteins
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040625-53 Enables cation:chloride symporter activity and identical protein binding activity. Acts upstream of or within inner ear morphogenesis and swim bladder inflation. Located in basolateral plasma membrane. Is expressed in several structures, including mesoderm; nervous system; notochord; otic vesicle; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 78. Orthologous to human SLC12A2 (solute carrier family 12 member 2).

Ensembl:

ensembl_id ENSDART00000164647

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003912 lncRNA upstream 129497 16070017 ~ 16096373 (+) False XLOC_002004
TCONS_00003904 lncRNA upstream 232608 15986197 ~ 15993262 (+) True XLOC_002001
TCONS_00005844 lncRNA upstream 272400 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005847 lncRNA downstream 67943 16374860 ~ 16377236 (+) False XLOC_002008
TCONS_00005848 lncRNA downstream 67943 16374860 ~ 16396280 (+) True XLOC_002008
TCONS_00005696 lncRNA downstream 780337 17087254 ~ 17087788 (+) True XLOC_002017
TCONS_00005697 lncRNA downstream 791086 17098003 ~ 17100587 (+) True XLOC_002018
TCONS_00005849 lncRNA downstream 928360 17235277 ~ 17243055 (+) False XLOC_002023
TCONS_00003917 mRNA upstream 33257 16188761 ~ 16192613 (+) False XLOC_002006
TCONS_00003918 mRNA upstream 33257 16190973 ~ 16192613 (+) True XLOC_002006
TCONS_00003916 mRNA upstream 38070 16168514 ~ 16187800 (+) True XLOC_002005
TCONS_00003915 mRNA upstream 39179 16165533 ~ 16186691 (+) False XLOC_002005
TCONS_00003913 mRNA upstream 64869 16092671 ~ 16161001 (+) True XLOC_002004
TCONS_00003922 mRNA downstream 194782 16501699 ~ 16540603 (+) True XLOC_002009
TCONS_00003923 mRNA downstream 240342 16547259 ~ 16563953 (+) True XLOC_002010
TCONS_00003925 mRNA downstream 277465 16584382 ~ 16587854 (+) True XLOC_002012
TCONS_00003926 mRNA downstream 285934 16592851 ~ 16703733 (+) False XLOC_002013
TCONS_00003927 mRNA downstream 286001 16592918 ~ 16748593 (+) True XLOC_002013
TCONS_00003910 other upstream 185662 16036907 ~ 16040208 (+) True XLOC_002003
TCONS_00003900 other upstream 264956 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003899 other upstream 271055 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003898 other upstream 271211 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003893 other upstream 620727 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003924 other downstream 268161 16575078 ~ 16575175 (+) True XLOC_002011
TCONS_00003933 other downstream 813000 17119917 ~ 17120049 (+) True XLOC_002019
TCONS_00003934 other downstream 816451 17123368 ~ 17123500 (+) True XLOC_002020
TCONS_00003935 other downstream 818423 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003936 other downstream 820399 17127316 ~ 17127448 (+) True XLOC_002022

Expression Profile

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