XLOC_002023


Basic Information

Item Value
gene id XLOC_002023
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17235277 ~ 17433878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005849
GTTTATGTCTAATAATTTAGCGCCCGTTATTCTGGATGATCGCAGGGTGGCAGCAAACCTCCTTTAACTGTTTACTGCTGTGTCATGCCAAGCAAGTTAGATTGCGCTCTTCGTGAACAGCGCTTCGGGGATGGTTTTTCACCACACCTCAAGTGATTTTTCGTAgtaagtttttttctttcacgtgttattgtaaaataaacacgAGGACCGTCATTTTCACATTACATGAACAATTGTAGATCAGCAGTGCCAGCGGGCCTGGCTTTTAACAGCCCTTTTTATGGATACCAAAGGTCAAAGAGAGGAAACAACACTGCACATATTGGCATATTCATCTAAACGCCAGTGGATGGATTCTTAAGCAGTATATCACTGCAGAGGTATTTC
>TCONS_00005698
GTTATTCTGGATGATCGCAGGGTGGCAGCAAACCTCCTTTAACTGTTTACTGCTGTGTCATGCCAAGCAAGTTAGATTGCGCTCTTCGTGAACAGCGCTTCGGGGATGGTTTTTCACCACACCTCAAGTGATTTTTCGTAAGAGGAAACAACACTGCACATATTGGCATATTCATCTAAACGCCAGTGGATGGATTCTTAAGCAGTATATCACTGCAGAGGTATTTC
>TCONS_00003937
AAGTTAGATTGCGCTCTTCGTGAACAGCGCTTCGGGGATGGTTTTTCACCACACCTCAAGTGATTTTTCGTAAGAGGAAACAACACTGCACATATTGGCATATTCATCTAAACGCCAGTGGATGGATTCTTAAGCAGTATATCACTGCAGAGgtaTTGTTAAAGCTCCTGAAAGCTCTTCCACTGGTGATGTGTGTGCAAACACCTCTGAGTCTCTGTCCCATACCTGCTGACCTAGATAACACTGGCGTACTCCCTTGTCGACTCCAGCCAGGTGTCAACCTTCCTCATCTCCATCCTCCTCATCGTCTATGGCAGCTTCAGGTCATTAAACATGGACTGCGAGAACCAGGAGAAAGACAAGGATGGAAACCCCACCGCCAGTGGCTCCTTCAACAATGCCAACTCTAACAACAGTATTCAGACCATAGACTCCACACAGGCGCTGTTCCTGCCAATCGGAGCCTCCGTGTCTCTGCTCGTCATGTTTTTCTTCTTTGACTCGGTTCAGGTGGTCTTCACCATATGCACTGCAGTTCTAGCAACCATTGCATTTGCGTTCCTTCTGCTGCCGATGTGCCAGTATCTGACCAGACCCTGCTCCCCACAAAACAAGATCTCATTCGGCTGCTGTGGCCGCTTCACGTTGGCGGAGCTGCTGTCGTTTTCGCTCTCTGTCATGCTGGTTCTCATCTGGGTGCTGACGGGCCACTGGCTGCTCATGGACGCTCTTGCCATGGGTCTCTGCGTGGCTATGATTGCGTTTGTGAGGCTGCCGAGTCTGAAGGTGTCGTGTTTACTGCTGTCAGGCCTGCTCATCTATGATGTTTTCTGGGTCTTCTTCTCCGCCTACATCTTCAACAGCAACGTGATGGTGAAAGTGGCCACACAGCCTGCAGACAACCCACTGGACGTGCTGTCACGCAAACTTCACCTGGGGCCTGGCATGGGTCGGGACGTTCCCCGTCTCTCGCTGCCCGGCAAGTTGGTGTTTCCTAGCTCCACCGGCAGCCACTTCTCCATGCTGGGCATCGGCGATATCGTCATGCCAGGCCTGCTGCTGTGTTTCGTGCTGCGATATGACAACTATAAAAAACAGGCCACCGGCGAAGTGCCCGGCCCTGCCAACATGTCAGGCCGCATGCAGAGGGTTTCCTACTTCCACTGCACCCTCATCGGTTACTTTGTTGGTCTGTTGACTGCAACCGTGGCCTCTCGTATTCACCGCGCGGCCCAGCCTGCTCTCCTGTACCTGGTGCCCTTCACCCTGCTGCCTCTGCTCACTATGGCCTACCTGAAGGGGGACCTGCGGCGCATGTGGTCCGAGCCCTTTCACGCCAAATCCAGCAGCTCCCGCTTCCTGGAGGTATGATGCTGCTCCGGCCAGCCTCCCGAACTTaccagagaaagagagaaagagagaggtcgGAAGAGAGGAACCGCACTCGTCTTCTCATCATCCCTCATTCCTTTTGTCATCCTCCAGCCAGCGGATGAACAGCCGTACGCGGACTTCACTGCCAGATGGATTCATGCGCTCCACACGTCTCCATAGCTGTCCTTTCCTCCTTTCTTCCTATTCATTCCATCTttatctctctgtctctctcagtCTCTCTTTCTTCTATCCCATCATCCCTTTTTCCTGTTTTACTGAACTAAGCTACACTTTTCCGGATCTGGACGTGACCGGAGCCTGTTTGAGCTCCACGTGTGTTTCCATTTGTGCCGTCTGGCTCCATTATGGATTTACAGACTGCGACTTCTTGATTATTTACTGATCTAAACGAAACTGTGGACGACGAACGTAGATTCCGCCACAGCTTGGGATGACGATGACCCTATATAAGGGACCAGCACACAGTAGAGGACAGCGTTGTTCCCCCCCCACCCCTTTCCTTCCTTCGTTCTCTCTTCCTCTTTCCCTGACAAATCCCCACCCGCATCCTTTCCTTCCCCCTCTAACAAGCCCTTCCTTCGCagaaacatgtattttatttagaaagATTTTATTCTTGGCATATACAGAAATGATGCATTATAAATTTTGAGGGCATACAGCTCTTTGTATATATGTGTACACATGTATTAGGGGTTATCATGTCGAGGTGCGAGTGTGCGCGAgattgcgtgtatgtgtgtgagtgcgtgtgcgaaaatgcatttaaatggaaCTGTTTTTCGTTGCTTTTAGATCTCGTAAACGAAACAAAATGGAAATAATTTTCTTCCTTCACCTTTCTTCACCCCACCCTCCCCACCCCCAAACCCCTACAAATGGGCCTAACAGCTCTGCCTAGGTCACTTTTACTGCAAAATGGACCGTTTGCGCAACTCGGCCTTTGAAGCGaagggtgtgcgtgtgtttacgtttgtgtttatgtatgaatgtatgccGTCTCCTCCGTGGGCGCTGATTGGACCACTGAAGATGAGCTCTGTCGTGCTCCTGGAGGGACTCTTAAAGGATTGTACTAATTTAAACGGGCCGAGTTTTGTTTTCCACTAGTATTTCAAgcattaatgtttttgttttccttCATTTGTAGTCATTCCTTCAACACAATTGGCTCTGATGAAACTGGAATCGAGGTGCGAGTTCTGTGTGATTGAGCGTAATGTTGTAGAAATAATGCATTTTG
>TCONS_00003938
gtcgttttaaattttatattttgctaGATCCCTCCAGAAACTGTTTACAACGTTGCTTTTAAACGAAAAATGACAGAGGCTCTTTATCTGCATTACAGAAACCACAGATGTCTTCCATTTACTTTGATAGTAAATATTTACTGGGTAAAATGTATGTAGTATTTTAAAGTTAATTGTATTGTTAATTGAATATTTGAAGGTAGTTAACCAGGCTTTTTTCCAATTTATAttaactaaaatgttatttataatattaattgaGTTCCAGGTGGCCTTTTTAAAGACTACCGTCTTAAAAATAGGTCTACACTATTATTTCAGCGAGCCAATTATGAGCAGCATGTCGAAACTGCAATACTGCATGTCACCGAGTGGCAGATCCTGGCCCTTCAATCTCATCTGTGTGGGCAAATGAGAGCGTGCACGCGCATTTTTCCGGCAGGGGCGACAGTCGCGCGCGTTCCTGTGAGTTCGCCATAGAAAACAAAGCTATCCGTGCGCTTCCATTACAGCTAGTTGGGCAAACCCAGCACACGGCTATCTCTCGCTCTGCATGCACGCCGAAGATGGGTTTGCAGCTCGTCTGAGGGGCCTTTCAAAGCAGGGCCTGTTGCGAGGACAGCCAGCCAGCTGAAGTCAGCGAAACGTTTCGTTTTTTCGGACTGCTTTTGTTTCTTAGCCGCGGCTAGCAGCACAGCCACAATCATTGACATTTCTGCTGCGAGCTGCCGAAGGAAAACACATCGCCATGTTGTTAACGGAGGGGGCTCAGTGAAGAAGGTGAAACCTTGAGCTTGTGGAGGAGATAATCTCGTCGTTTGAGCCGAACTCGAGTCCTCAGCCGCCGCCGCTgcccgactgactgactgacatggCGGAGCAGAGCTACTCCTGGGCGTACTCCCTTGTCGACTCCAGCCAGGTGTCAACCTTCCTCATCTCCATCCTCCTCATCGTCTATGGCAGCTTCAGGTCATTAAACATGGACTGCGAGAACCAGGAGAAAGACAAGGATGGAAACCCCACCGCCAGTGGCTCCTTCAACAATGCCAACTCTAACAACAGTATTCAGACCATAGACTCCACACAGGCGCTGTTCCTGCCAATCGGAGCCTCCGTGTCTCTGCTCGTCATGTTTTTCTTCTTTGACTCGGTTCAGGTGGTCTTCACCATATGCACTGCAGTTCTAGCAACCATTGCATTTGCGTTCCTTCTGCTGCCGATGTGCCAGTATCTGACCAGACCCTGCTCCCCACAAAACAAGATCTCATTCGGCTGCTGTGGCCGCTTCACGTTGGCGGAGCTGCTGTCGTTTTCGCTCTCTGTCATGCTGGTTCTCATCTGGGTGCTGACGGGCCACTGGCTGCTCATGGACGCTCTTGCCATGGGTCTCTGCGTGGCTATGATTGCGTTTGTGAGGCTGCCGAGTCTGAAGGTGTCGTGTTTACTGCTGTCAGGCCTGCTCATCTATGATGTTTTCTGGGTCTTCTTCTCCGCCTACATCTTCAACAGCAACGTGATGGTGAAAGTGGCCACACAGCCTGCAGACAACCCACTGGACGTGCTGTCACGCAAACTTCACCTGGGGCCTGGCATGGGTCGGGACGTTCCCCGTCTCTCGCTGCCCGGCAAGTTGGTGTTTCCTAGCTCCACCGGCAGCCACTTCTCCATGCTGGGCATCGGCGATATCGTCATGCCAGGCCTGCTGCTGTGTTTCGTGCTGCGATATGACAACTATAAAAAACAGGCCACCGGCGAAGTGCCCGGCCCTGCCAACATGTCAGGCCGCATGCAGAGGGTTTCCTACTTCCACTGCACCCTCATCGGTTACTTTGTTGGTCTGTTGACTGCAACCGTGGCCTCTCGTATTCACCGCGCGGCCCAGCCTGCTCTCCTGTACCTGGTGCCCTTCACCCTGCTGCCTCTGCTCACTATGGCCTACCTGAAGGGGGACCTGCGGCGCATGTGGTCCGAGCCCTTTCACGCCAAATCCAGCAGCTCCCGCTTCCTGGAGGTATGA

Function

GO:

id name namespace
GO:0043543 protein acylation biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0006325 chromatin organization biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0006473 protein acetylation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0016407 acetyltransferase activity molecular_function
GO:0034212 peptide N-acetyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050913-71 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving and protein homodimerization activity. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in rough endoplasmic reticulum. Predicted to be active in Golgi-associated vesicle membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in central nervous system. Orthologous to human SPPL3 (signal peptide peptidase like 3).

Ensembl:

ensembl_id ENSDARG00000025220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005849 False 390 lncRNA 0.42 2 17235277 17243055
TCONS_00005698 False 227 lncRNA 0.44 2 17235302 17243055
TCONS_00003937 False 2641 mRNA 0.50 12 17235370 17433878
TCONS_00003938 True 2020 mRNA 0.52 10 17371356 17432608

Neighbor

gene id symbol gene type direction distance location
XLOC_002022 BX324123.2 coding upstream 107829 17127316 ~ 17127448 (+)
XLOC_002021 BX324123.3 coding upstream 109811 17125340 ~ 17125466 (+)
XLOC_002020 BX324123.5 coding upstream 111777 17123368 ~ 17123500 (+)
XLOC_002019 BX324123.6 coding upstream 115228 17119917 ~ 17120049 (+)
XLOC_002018 si:dkey-106l3.7 coding upstream 134458 17088261 ~ 17100819 (+)
XLOC_002027 NA coding downstream 4280 17438158 ~ 17438484 (+)
XLOC_002028 NA coding downstream 8356 17442234 ~ 17449039 (+)
XLOC_002029 dre-mir-130c-1 coding downstream 19485 17453363 ~ 17453503 (+)
XLOC_002030 dre-mir-301c coding downstream 20612 17454490 ~ 17454572 (+)
XLOC_002031 NA coding downstream 25779 17459657 ~ 17497772 (+)
XLOC_002017 NA non-coding upstream 147489 17087254 ~ 17087788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_07154005_07160649 SPPL3 coding CI01000304 null 7154005 ~ 7161125 (+)