XLOC_002018 (si:dkey-106l3.7)


Basic Information

Item Value
gene id XLOC_002018
gene name si:dkey-106l3.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17088261 ~ 17100819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003932
AGTCTTGAGAAAGTCAAGGTGCTGCGAGACAGTTCTGAAGGTCTCACTGACTCTAAGGAGAGAAAGTAATTTCCAATGAATCTTTACAGGAGTTTTGGGAATATTTTTGAGAATTTGGTGGCTAAAGGCTATTCTGATTCAAGCTTTCATTCACCAGCTGGTTTGGACAGAACAGATTCAGTGTCGAGGGAATCTGTTCCACTTTCCAATGTAAAATCAGAATCTGAGGACTCAGGAGTTGAGACGATTAGTACGACTAGCCCCTGTCATTCTCACCAATGTAGTGGATTGACCTCTGAAGAAATACATCCAGTTTTTGATTCTACAGAGGATCCTCCATCTCCGTCTCCATCTATctgttcctcctcctcctcgaaTGTCTCACTTGGCACTGTGGCTCAGAAAACCACATGTCTGGAAGTGGAGCAAGCTTTAAGAAGAGCAGAACCATCCTGTAGAGAAAAAAGTTGGACTACTGGACTGTGGTATGAAAGCAATACAACCTCTTTTTCGACCAGCTGTCATCTCATTGGCTCCAGAACAGAAAATCATCGGTTTGCTCACCCAAGGAGAACGCATTCACAACCTCCAGATCCACAGAAAGCGGAGCTGTACAGAAAACACCTTAAATTACGCCATCATGGCTACCCAGTTGACAGACAGGTAGAGTTGGCAGACGGTGGTGATCAGGCCAGGCTGGACGCGCTCTCTCCAGGCCTGCTGTACCTAGAGCAGGTGTGCAGGATGCTGGAGAACATCGCAAAACTACAGCAGCAAAACCAGAGCCTGCAGAGCGAGCTGGAGGTCCTGAGGAGTCAGCAGGCACAAATACAGTGTGTAAGCTCGCATGAGGAGGAAATAAGCTGTCCAGCCTTTCAACATTTAGACATTCTGAGTCATGAATCACCAGCCAGCCAATCCACTCTCTTAAAGGAGCCTGGAGGGTTTCGCCACAGATCAGCATCTGACACTCAGACCATCAACCGTCACAGGAGAACAAGGTTTGTTCGAGATGAGCAAATTGCTGATGCTTTAGTTGAGGAACCTGAAGATAAGGATCCTCTACCGGAAATTAAACACAAGAATCAAAGCAGGATTCAAAAGCTAAAATTTACGTCATTTAGAAAGAAGCAAACACATCAGTCTGATGCAGAAAGCAACAGCCTTCAGACtaagaagaaaacaaaattgCAAAACATGTTCAGGAGAAGGATGACCACACGTCTCTAGCATCCAGGGATGTCCAGGGATGATGTCTCACAGTGGTCATTCACAGTTCCCATTTACCCCAGCATTAAAGCACTATTATTTGTATCTGTTGTGTTTAGTCATGTATGTAAGGTTGCACTTCAAAAAAGtactaataattcattcattcaataatgtGCTTTGTACAGTATGTGTTAATGATGTGCACTGTTTTTTAATTGCTGGATCCTTTTATTTAATGCAAGTAGATTATGATTTATTATGGTAAATATTAGTCTGTTGCTGCTAAAACaattgttttgaatattttttttataaaaatgttttacattgcTGTAAAATGTAAAGATAGGGGAAAATACTACATACacacattattaaatatatagttcACATTCTCtttgcacaacaaaacaattactaaatatgaatttatacacaccacaaaagaaaaaacacatgTTGTACTGAACAATCACATTCATGTTGCTTgtagaataattaaaaaaataatcgttGAGTGAAATATCCCCATTTAAGAACAATTATGTTAATTAAACATAAAGTGTGTTAAATTCACTGTTGTCttgcatttttaaatgcaaaatatttcTATTGTGTCAGCAATAAACTTAGTTTTTTATGA
>TCONS_00005697
CACAGGGAGAACAAGGTTTGTTCGAGATGAGCAAATTGCTGATGCTTTAGTTGAGGAACCTGAAGATAAGGATCCTCTACCGGAAATTAAACACAAGAATCAAAGCAGGATTCAAAAGCTAAAATTTACGTCATTTAGAAAGAAGCAAACACATCAGTCTGATGCAGAAAGCAACAGCCTTCAGACtaagaagaaaacaaaattgCAAAACATGTTCAGGAGAAGGATGACCACACGTCTCTAGCATCCAGGGATGTCCAGGGATGATGTCTCACAGTGGTCATTCACAGTTCCCATTTACCCCAGCATTAAAGCACTATTATTTGTATCTGTTGTGTTTAGTCATGTATGTAAGGTTGCACTTCAAAAAAGtactaataattcattcattcaataatgtGCTTTGTACAGTATGTGTTAATGATGTGCACTGTTTTTTAATTGCTGGATCCTTTTATTTAATGCAAGTAGATTATGATTTATTATGGTAAATATTAGTCTGTTGCTGCTAAAACaattgttttgaatattttttttataaaaatgttttacattgcTGTAAAATGTAAAGATAGGGGAAAATACTACATACacacattattaaatatatagttcACATTCTCtttgcacaacaaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-216 No description available

Ensembl:

ensembl_id ENSDARG00000093444

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003932 False 1855 mRNA 0.40 6 17088261 17100819
TCONS_00005697 True 637 lncRNA 0.34 3 17098003 17100587

Neighbor

gene id symbol gene type direction distance location
XLOC_002017 NA coding upstream 473 17087254 ~ 17087788 (+)
XLOC_002016 CR855996.2 coding upstream 25715 17026870 ~ 17062546 (+)
XLOC_002015 UNC13B coding upstream 68317 16911951 ~ 17019944 (+)
XLOC_002014 CABZ01024659.1 coding upstream 330419 16756546 ~ 16757842 (+)
XLOC_002013 chsy3 coding upstream 339668 16592851 ~ 16748593 (+)
XLOC_002019 BX324123.6 coding downstream 19098 17119917 ~ 17120049 (+)
XLOC_002020 BX324123.5 coding downstream 22549 17123368 ~ 17123500 (+)
XLOC_002021 BX324123.3 coding downstream 24521 17125340 ~ 17125466 (+)
XLOC_002022 BX324123.2 coding downstream 26497 17127316 ~ 17127448 (+)
XLOC_002023 NA coding downstream 134458 17235277 ~ 17433878 (+)
XLOC_002011 CR790388.2 non-coding upstream 513086 16575078 ~ 16575175 (+)
XLOC_002008 NA non-coding upstream 691981 16374860 ~ 16396280 (+)
XLOC_002000 dre-mir-24-1 non-coding upstream 1127347 15960835 ~ 15960914 (+)
XLOC_001999 dre-mir-27d non-coding upstream 1133446 15954727 ~ 15954815 (+)

Expression


Co-expression Network