RNA id: TCONS_00003918


Basic Information

Item Value
RNA id TCONS_00003918
length 282
RNA type mRNA
GC content 0.55
exon number 2
gene id XLOC_002006
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16188761 ~ 16192613 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGaatattctcaaaaaaaaagcTGCGCAGTGCCAAACATTACCACCAGATGAGCCGTTCACCTCCTCCCTTCAGACGGGGGGTCCTGTGGCGGGCGCCAACATGACTCTGGAGCAGAAGACCACTTTTGCCTTCGTCATCTTCCTCTTTGTCTTCCTCTGCATGCTGATCGTGCGCTGCTTCCGCATTCTGCTGGACCCCTACCGCAGCATGCCCACCTCCACGTGGGCAGATGGTCTGGATGGCCTTGAGAAGGGCCAGTTTGATAACACCCTGGCATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179681

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003912 lncRNA upstream 94600 16070017 ~ 16096373 (+) False XLOC_002004
TCONS_00003904 lncRNA upstream 197711 15986197 ~ 15993262 (+) True XLOC_002001
TCONS_00005844 lncRNA upstream 237503 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005847 lncRNA downstream 182247 16374860 ~ 16377236 (+) False XLOC_002008
TCONS_00005848 lncRNA downstream 182247 16374860 ~ 16396280 (+) True XLOC_002008
TCONS_00005696 lncRNA downstream 894641 17087254 ~ 17087788 (+) True XLOC_002017
TCONS_00005697 lncRNA downstream 905390 17098003 ~ 17100587 (+) True XLOC_002018
TCONS_00005849 lncRNA downstream 1042664 17235277 ~ 17243055 (+) False XLOC_002023
TCONS_00003916 mRNA upstream 3173 16168514 ~ 16187800 (+) True XLOC_002005
TCONS_00003915 mRNA upstream 4282 16165533 ~ 16186691 (+) False XLOC_002005
TCONS_00003911 mRNA upstream 29933 16069987 ~ 16161040 (+) False XLOC_002004
TCONS_00003919 mRNA downstream 32504 16225117 ~ 16310179 (+) False XLOC_002007
TCONS_00003920 mRNA downstream 32940 16225553 ~ 16264324 (+) False XLOC_002007
TCONS_00003921 mRNA downstream 33257 16225870 ~ 16306917 (+) True XLOC_002007
TCONS_00003922 mRNA downstream 309086 16501699 ~ 16540603 (+) True XLOC_002009
TCONS_00003923 mRNA downstream 354646 16547259 ~ 16563953 (+) True XLOC_002010
TCONS_00003910 other upstream 150765 16036907 ~ 16040208 (+) True XLOC_002003
TCONS_00003900 other upstream 230059 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003899 other upstream 236158 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003898 other upstream 236314 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003893 other upstream 585830 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003924 other downstream 382465 16575078 ~ 16575175 (+) True XLOC_002011
TCONS_00003933 other downstream 927304 17119917 ~ 17120049 (+) True XLOC_002019
TCONS_00003934 other downstream 930755 17123368 ~ 17123500 (+) True XLOC_002020
TCONS_00003935 other downstream 932727 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003936 other downstream 934703 17127316 ~ 17127448 (+) True XLOC_002022

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU418958 True 2701 TUCP 0.43 2 NC_048569.1 12134052 ~ 12136790 (-)
mexican tetra (Astyanax mexicanus) TU418958 False 1195 lncRNA 0.48 3 NW_019172839.1 645161 ~ 647055 (-)