Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003910 |
| length | 796 |
| RNA type | processed_transcript |
| GC content | 0.34 |
| exon number | 2 |
| gene id | XLOC_002003 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 16036246 ~ 16056908 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005882 | intermediate filament | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-020424-2 | Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in adult-onset autosomal dominant demyelinating leukodystrophy and primary autosomal recessive microcephaly. Orthologous to human LMNB1 (lamin B1). |
| ensembl_id | ENSDART00000132918 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003904 | lncRNA | upstream | 43645 | 15986197 ~ 15993262 (+) | True | XLOC_002001 |
| TCONS_00005844 | lncRNA | upstream | 83437 | 15937306 ~ 15953470 (+) | False | XLOC_001997 |
| TCONS_00005845 | lncRNA | upstream | 83437 | 15937504 ~ 15953470 (+) | False | XLOC_001997 |
| TCONS_00005846 | lncRNA | upstream | 83437 | 15937765 ~ 15953470 (+) | True | XLOC_001997 |
| TCONS_00003897 | lncRNA | upstream | 223820 | 15802941 ~ 15813087 (+) | True | XLOC_001996 |
| TCONS_00003912 | lncRNA | downstream | 29809 | 16070017 ~ 16096373 (+) | False | XLOC_002004 |
| TCONS_00005847 | lncRNA | downstream | 334652 | 16374860 ~ 16377236 (+) | False | XLOC_002008 |
| TCONS_00005848 | lncRNA | downstream | 334652 | 16374860 ~ 16396280 (+) | True | XLOC_002008 |
| TCONS_00005696 | lncRNA | downstream | 1047046 | 17087254 ~ 17087788 (+) | True | XLOC_002017 |
| TCONS_00005697 | lncRNA | downstream | 1057795 | 17098003 ~ 17100587 (+) | True | XLOC_002018 |
| TCONS_00003905 | mRNA | upstream | 1494 | 16029260 ~ 16035413 (+) | True | XLOC_002002 |
| TCONS_00003903 | mRNA | upstream | 38993 | 15967643 ~ 15997914 (+) | False | XLOC_002001 |
| TCONS_00003902 | mRNA | upstream | 39202 | 15967341 ~ 15997705 (+) | False | XLOC_002001 |
| TCONS_00003901 | mRNA | upstream | 39202 | 15967341 ~ 15997705 (+) | False | XLOC_002001 |
| TCONS_00003896 | mRNA | upstream | 223628 | 15777258 ~ 15813279 (+) | False | XLOC_001996 |
| TCONS_00003911 | mRNA | downstream | 29779 | 16069987 ~ 16161040 (+) | False | XLOC_002004 |
| TCONS_00003914 | mRNA | downstream | 52463 | 16092671 ~ 16161001 (+) | False | XLOC_002004 |
| TCONS_00003913 | mRNA | downstream | 52463 | 16092671 ~ 16161001 (+) | True | XLOC_002004 |
| TCONS_00003915 | mRNA | downstream | 125325 | 16165533 ~ 16186691 (+) | False | XLOC_002005 |
| TCONS_00003916 | mRNA | downstream | 128306 | 16168514 ~ 16187800 (+) | True | XLOC_002005 |
| TCONS_00003900 | other | upstream | 75993 | 15960835 ~ 15960914 (+) | True | XLOC_002000 |
| TCONS_00003899 | other | upstream | 82092 | 15954727 ~ 15954815 (+) | True | XLOC_001999 |
| TCONS_00003898 | other | upstream | 82248 | 15954579 ~ 15954659 (+) | True | XLOC_001998 |
| TCONS_00003893 | other | upstream | 431764 | 15603084 ~ 15605143 (+) | False | XLOC_001994 |
| TCONS_00003878 | other | upstream | 732540 | 15298790 ~ 15304367 (+) | True | XLOC_001989 |
| TCONS_00003924 | other | downstream | 534870 | 16575078 ~ 16575175 (+) | True | XLOC_002011 |
| TCONS_00003933 | other | downstream | 1079709 | 17119917 ~ 17120049 (+) | True | XLOC_002019 |
| TCONS_00003934 | other | downstream | 1083160 | 17123368 ~ 17123500 (+) | True | XLOC_002020 |
| TCONS_00003935 | other | downstream | 1085132 | 17125340 ~ 17125466 (+) | True | XLOC_002021 |
| TCONS_00003936 | other | downstream | 1087108 | 17127316 ~ 17127448 (+) | True | XLOC_002022 |
