RNA id: TCONS_00005844


Basic Information

Item Value
RNA id TCONS_00005844
length 3602
lncRNA type intronic
GC content 0.36
exon number 2
gene id XLOC_001997
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15937306 ~ 15953470 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GtcaatttcataacttaaaaatgCAAGACCTCTCGTCAAGCAGCATGATGTATTCCACTAAATCTGCTGCACAAAAGGTGCAGGATGAGATGCACAGTAAAGATTCTTGCTTAAGGTTGTAACTCTATAACCTTCAGCAGTAAAACCCAGTAATGCTTTGGCATCCAGCAGACAAAAGGGTGGGACTGGCAGGAAAAAGCAGCGATGAGTATAGCTCATGTTCTCCTTTATGAGCCCCTCATCTAACGACCGCATTTGATTACAGTAAGGCTCAGAGTTAAAGAACTTTTTACAGGATTACCGCCAGTTtcctccagcacacacacacacacactcacactgctgGATGGTGGAGTGTTTCTGTGAAACCGGAGTGGGCTGAAGCTGTAATGAGGGCTATGAAGGGATGATGTTGAAGGCAGTCAGGCAAAACAGCGGGGAGTCACTCTGAATTGTACGATTCACTTCTCTGGTTGGTCTCTGTTGAGCAGTCCGTTCTGATTTCACAGTGGAGAAGCTGAAAGAGGCACTAAAAAGTCTAATAACTGTGCACGACTCCACAAAAGGCCGGAATGAGCTGGACGTTTCAGAAGAGCTCGAAGCATTAAGACTGGAGAATTACAGTCCATCTTTGGAGTTTGTGAGGCTTGCAGATTCACATCACACCAGGCTGCACTTTATTTTGCAGTCAGTTTGATTTATTCCTGTTTGATGTGGCGTCAGTTTTTTACACTTCCTTCACCACATATTGTAAAGCAAATGACTTCATTTAGAGATATGACAAACATCAGACAGAGAGAAAAGCCAAATAGAGGACGTCAGAAGTGAAATGGTTCTCATAAAACATCCTTCAAAGGcatttaaaactgttaaaatgttCACACAAGACTAATGATTTCTTCTAATTATTTAATCGTGTTAGCTCGACTTGGGTGGCAAGTAAATGTGTAAACGGCTTTTATAATAAACCGTGTAACCTCATCTGCTCTCATGGCTGTAATACAAAATGCACATACAGCTACAGTACACCACTAATTACAAGACAGCTATAATTTATGGACATGTACCATGGTGATGCTGTGGTATTCTCTGAAGTTCCTTTAAATGCCATGTAAATTATTTATAGTTTCTTCTCTCCACTGGTAAATATATTTGTTCATACAAGAAAACCTctacaccaggggtgcccaaactttttcttgtgaaaggccaaaaaccaaacttgattgatggccatgggccgaaggtaaatatatccaactgtatttgtttattcattccttcattttcttgtcggcttagtccttttattaatctggggtccggcacgtttttacacagcggatgcccttccagccgcaacccatctttgggaaacattcacacacacacacagacactcatacactacaggcaatttagcccataattcacctgtaccgcatgtctttggactgtgggggaaacctgagcacccggagaaaacccacgcaaacgtagggagaacatgcaaactccacacagaaacgccaactgagcagaggttcgaactagcaacccagcgaccatcttgctgtgaggcgacagaactacctactgccccaTTGTGTCGCTCTTACTGTATTATAATATGATAATTtcctcattcatttcaaaataaatacaaaaaattactTAATCATTAATTGTATTAactaatacattatttatttttgacagtttATAATGAAACTGTTATAAAGAAAACGGAGTTTAATACCGAATACACTAATTGCACCTGCCTTAGCCTTGATTTGTTCACTGAGGAGGACTTCTGAATTGTGGTCTATCCATTCagtaacaatatttttataaaaaaatatatttaatttattaattaattcatgtttatttctatagcgcttttacaatgtagattgtgtcaaagcagcttaaaatagaaGTTCAAGTTGAAAATGTGTcacttcagttttcagagttgaagttcagttcagttcagtgtggtttaaatttcacagctgaaagtccaaacactgaggagcaaatccatcaatgcgcagctccacaagtcccaaccaatGGGCAAATGTGTATTAAAGGCATTAACCCCAACACTCCCTAAAATTTTCCCTCTTCTTCTCAGatggccaaattaaaggttactaTGGGCCAACTTTAGCCCACAGACCCTAGTTTGGCCATCTCTGCTCTATACAATGGAATATGatcacaattttaaataattactcctattgtaatatgttttaaaatgtaactgaTTCAGAAAGCTAAATGTCACAAATGTCACATGTTTAATGTCACAAAAACCTTCATTTAGAATTAATTCGAAAATGCTGatttaatgaacaaaaaaattgaaaaaaattaaatcccCCAAAAatcaatgatgataataataataataataattaaattaaggaatctggaataaattacatttaaaaatacctTCAAATGAAAACAGATTAATTTAAATGgaattgtaaatacattttagaaCAGTAATGAAacgaaatgaaataaataaaaactgttttatgaACACACAAGACTCCTTTAAAAAGCATTATTAAAGTGTAGGGCTTTTCACACTGTATTTATCTGGGGGTTATTGTTGTTCAAACCTTAAACTGTAGCAGAGGAATGTTTCACACTTGTTGTTAACCTGACAATGTGTTTGAATTCAGTTTTTGTAAGGcagtttttgtaaacattttcaaCACGATCCCCATTCACTTGTGAAAACAACAAAATGCTGCACAAAAATTTGCAgagcaaaaacacacactcagacacacagcTTTGTAATCCACCATTGTTGCTTTGCTATCAAGTACACTGCATTCAAGTCATGCTAGAAATTTTTAGGCAAATGACCATGAGCACTACCTTAAATATATAATCACAAGTGAAGAGTTTACATCAGAAAAGGTGCATTAAAATCTTGCTGAGAGAACTTGTATAGACCAGTTCTCACTTTTGCATATACTGTAGGCTGAACACATGATACCGTTTAATCCAATAATCAACAGTGACCATTTtcataaaatcacatttttgtagtttacatggtaaatttaacacaattaactaaaataatataattaactaaattatttttgaaAGCCTGTTATTAATGATTGTGTTTTCCAAAATGCAGCAGACAAATTATTTATTGTGGTGACAAATGTGGCGTTAGCATCTCATGTCTACACACAATCATTTGCCTCATGTTGAAAACCATGCAGGCTTACTGGAAATATGTGACTGTCTGTGTTTCTGCATGCCAGGAATATATAAGAAATAGACTTGCCATAAACTGAAAATCTTGATATACCCAGGCATAGCTGACTTGTATGATTTCAGTTTATGTAAATGACACAACATGAGCTTCAAACATAATTTCTTTGTTATCATTTAAATCATGTCAGGGTAAATCCTAGTAAAAATACAGGCCAATCTGAATGAAACACGGACTCTGATGTTCCACACAGGAGTGTTTGATTGGCTACATTGCTTCCTAGTAAGATTACAGCAACAAAAAATCCTTTATTATAAGTTTTATctatactattaaaaaa

Function

GO:

id name namespace
GO:0070765 gamma-secretase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003897 lncRNA upstream 124219 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005695 lncRNA upstream 254835 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003891 lncRNA upstream 404089 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005694 lncRNA upstream 841044 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 848780 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00003904 lncRNA downstream 32727 15986197 ~ 15993262 (+) True XLOC_002001
TCONS_00003912 lncRNA downstream 116547 16070017 ~ 16096373 (+) False XLOC_002004
TCONS_00005847 lncRNA downstream 421390 16374860 ~ 16377236 (+) False XLOC_002008
TCONS_00005848 lncRNA downstream 421390 16374860 ~ 16396280 (+) True XLOC_002008
TCONS_00005696 lncRNA downstream 1133784 17087254 ~ 17087788 (+) True XLOC_002017
TCONS_00003896 mRNA upstream 124027 15777258 ~ 15813279 (+) False XLOC_001996
TCONS_00003895 mRNA upstream 124360 15777064 ~ 15812946 (+) False XLOC_001996
TCONS_00003892 mRNA upstream 324004 15603082 ~ 15613302 (+) False XLOC_001994
TCONS_00003894 mRNA upstream 325091 15608326 ~ 15612215 (+) True XLOC_001994
TCONS_00003887 mRNA upstream 338157 15454856 ~ 15599149 (+) False XLOC_001993
TCONS_00003902 mRNA downstream 13871 15967341 ~ 15997705 (+) False XLOC_002001
TCONS_00003901 mRNA downstream 13871 15967341 ~ 15997705 (+) False XLOC_002001
TCONS_00003903 mRNA downstream 14173 15967643 ~ 15997914 (+) False XLOC_002001
TCONS_00003905 mRNA downstream 75790 16029260 ~ 16035413 (+) True XLOC_002002
TCONS_00003906 mRNA downstream 82776 16036246 ~ 16043748 (+) False XLOC_002003
TCONS_00003893 other upstream 332163 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003878 other upstream 632939 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003873 other upstream 649406 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003854 other upstream 2005588 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 2042450 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003898 other downstream 1109 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 1257 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003900 other downstream 7365 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003910 other downstream 83437 16036907 ~ 16040208 (+) True XLOC_002003
TCONS_00003924 other downstream 621608 16575078 ~ 16575175 (+) True XLOC_002011

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU483048 True 1260 lncRNA 0.39 2 CI01000304 4639463 ~ 4645086 (+)