Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003891 |
| length | 679 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 2 |
| gene id | XLOC_001993 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 15454745 ~ 15599149 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032088 | negative regulation of NF-kappaB transcription factor activity | biological_process |
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0097120 | receptor localization to synapse | biological_process |
| GO:0045197 | establishment or maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0043113 | receptor clustering | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0008328 | ionotropic glutamate receptor complex | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016323 | basolateral plasma membrane | cellular_component |
| GO:0005176 | ErbB-2 class receptor binding | molecular_function |
| id | description |
|---|---|
| ko04621 | NOD-like receptor signaling pathway |
| id | description |
|---|---|
| ZDB-GENE-061103-403 | Predicted to enable ErbB-2 class receptor binding activity. Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and signal transduction. Predicted to be active in basolateral plasma membrane and cell junction. Is expressed in intestine. Orthologous to human ERBIN (erbb2 interacting protein). |
| ensembl_id | ENSDART00000122614 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005694 | lncRNA | upstream | 436054 | 15096017 ~ 15096262 (+) | True | XLOC_001985 |
| TCONS_00005693 | lncRNA | upstream | 443790 | 15087993 ~ 15088526 (+) | True | XLOC_001983 |
| TCONS_00005843 | lncRNA | upstream | 483534 | 15047006 ~ 15048782 (+) | True | XLOC_001981 |
| TCONS_00005842 | lncRNA | upstream | 489568 | 15036271 ~ 15042748 (+) | True | XLOC_001980 |
| TCONS_00005840 | lncRNA | upstream | 500876 | 15024992 ~ 15031440 (+) | False | XLOC_001979 |
| TCONS_00005695 | lncRNA | downstream | 148948 | 15682165 ~ 15682471 (+) | True | XLOC_001995 |
| TCONS_00003897 | lncRNA | downstream | 269724 | 15802941 ~ 15813087 (+) | True | XLOC_001996 |
| TCONS_00005844 | lncRNA | downstream | 404089 | 15937306 ~ 15953470 (+) | False | XLOC_001997 |
| TCONS_00005845 | lncRNA | downstream | 404287 | 15937504 ~ 15953470 (+) | False | XLOC_001997 |
| TCONS_00005846 | lncRNA | downstream | 404548 | 15937765 ~ 15953470 (+) | True | XLOC_001997 |
| TCONS_00003883 | mRNA | upstream | 81099 | 15408501 ~ 15451217 (+) | False | XLOC_001992 |
| TCONS_00003882 | mRNA | upstream | 81099 | 15408501 ~ 15451217 (+) | False | XLOC_001992 |
| TCONS_00003884 | mRNA | upstream | 84736 | 15408590 ~ 15447580 (+) | True | XLOC_001992 |
| TCONS_00003881 | mRNA | upstream | 150191 | 15340769 ~ 15382125 (+) | True | XLOC_001991 |
| TCONS_00003880 | mRNA | upstream | 150431 | 15340768 ~ 15381885 (+) | False | XLOC_001991 |
| TCONS_00003892 | mRNA | downstream | 69865 | 15603082 ~ 15613302 (+) | False | XLOC_001994 |
| TCONS_00003894 | mRNA | downstream | 75109 | 15608326 ~ 15612215 (+) | True | XLOC_001994 |
| TCONS_00003895 | mRNA | downstream | 243847 | 15777064 ~ 15812946 (+) | False | XLOC_001996 |
| TCONS_00003896 | mRNA | downstream | 244041 | 15777258 ~ 15813279 (+) | False | XLOC_001996 |
| TCONS_00003902 | mRNA | downstream | 434124 | 15967341 ~ 15997705 (+) | False | XLOC_002001 |
| TCONS_00003878 | other | upstream | 227949 | 15298790 ~ 15304367 (+) | True | XLOC_001989 |
| TCONS_00003873 | other | upstream | 244416 | 15255182 ~ 15287900 (+) | False | XLOC_001989 |
| TCONS_00003854 | other | upstream | 1600598 | 13930848 ~ 13931718 (+) | True | XLOC_001973 |
| TCONS_00003853 | other | upstream | 1637460 | 13856792 ~ 13894856 (+) | True | XLOC_001972 |
| TCONS_00003844 | other | upstream | 3198947 | 12333253 ~ 12333369 (+) | True | XLOC_001966 |
| TCONS_00003893 | other | downstream | 69867 | 15603084 ~ 15605143 (+) | False | XLOC_001994 |
| TCONS_00003898 | other | downstream | 421362 | 15954579 ~ 15954659 (+) | True | XLOC_001998 |
| TCONS_00003899 | other | downstream | 421510 | 15954727 ~ 15954815 (+) | True | XLOC_001999 |
| TCONS_00003900 | other | downstream | 427618 | 15960835 ~ 15960914 (+) | True | XLOC_002000 |
| TCONS_00003910 | other | downstream | 503690 | 16036907 ~ 16040208 (+) | True | XLOC_002003 |
