RNA id: TCONS_00003894


Basic Information

Item Value
RNA id TCONS_00003894
length 655
RNA type mRNA
GC content 0.56
exon number 4
gene id XLOC_001994
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15603082 ~ 15613302 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCCAGGAGACCAATCAAAGCCCCGTGCCCATGCTCTGTGCCACTGGCTGCGGTTTCTATGGTAACCCTCGGACCAATGGCATGTGCTCGGTCTGTTACAAAGAGCATCTAATGCGGCAAAACAACGGTGGAGTCAGTCCTATTAGCACAATGGCTTCCAGCAGTGTCACCAGTAGTCCTACCTCTGAAGCCTCAGCCATCCAGATCATTGAAGCTACGCTTAACAACTCTTCTGCTGCTAGCGCTGAGTCGCCCTGCGCAGCCGCCGCCGCTGCCCTTCCGGTTACACAACAGATGACTGAGATGAGCATTTCCTGTGAAGATGATGCCGCCTCGCCAAAAGTAGATCTTCCTGAGCCAGTTGTCACTCAGCCCACAGCGTCCAGCGCACCTCCAAGCACAGCTGAAGAGGAGGCCAAAACCGCCGGAGCCCCCAAACCCAAGAAGAACAGATGCTTCATGTGCCGCAAGAAGGTCGGCCTGACGGGGTTCGACTGCCGCTGTGGGAATCTCTTCTGTGGTCTCCATCGCTACTCAGACAAGCACAACTGCCCGTACGACTACAAGGCCGAAGCCGCCGCCAAGATCCGCAAGGAGAATCCAGTGGTGGTGGCCGATAAAATCCAGAGAATATAAAGCTCTCGTCCGCCGC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-875 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).

Ensembl:

ensembl_id ENSDART00000188770

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003891 lncRNA upstream 75109 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005694 lncRNA upstream 512064 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 519800 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 559544 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 565578 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005695 lncRNA downstream 69950 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 190726 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 325091 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 325289 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00005846 lncRNA downstream 325550 15937765 ~ 15953470 (+) True XLOC_001997
TCONS_00003887 mRNA upstream 9177 15454856 ~ 15599149 (+) False XLOC_001993
TCONS_00003886 mRNA upstream 11816 15454856 ~ 15596510 (+) False XLOC_001993
TCONS_00003885 mRNA upstream 12228 15454745 ~ 15596098 (+) False XLOC_001993
TCONS_00003888 mRNA upstream 30530 15454895 ~ 15577796 (+) False XLOC_001993
TCONS_00003890 mRNA upstream 30550 15511885 ~ 15577776 (+) False XLOC_001993
TCONS_00003895 mRNA downstream 164849 15777064 ~ 15812946 (+) False XLOC_001996
TCONS_00003896 mRNA downstream 165043 15777258 ~ 15813279 (+) False XLOC_001996
TCONS_00003902 mRNA downstream 355126 15967341 ~ 15997705 (+) False XLOC_002001
TCONS_00003901 mRNA downstream 355126 15967341 ~ 15997705 (+) False XLOC_002001
TCONS_00003903 mRNA downstream 355428 15967643 ~ 15997914 (+) False XLOC_002001
TCONS_00003893 other upstream 3183 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003878 other upstream 303959 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003873 other upstream 320426 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003854 other upstream 1676608 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1713470 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003898 other downstream 342364 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 342512 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003900 other downstream 348620 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003910 other downstream 424692 16036907 ~ 16040208 (+) True XLOC_002003
TCONS_00003924 other downstream 962863 16575078 ~ 16575175 (+) True XLOC_002011

Expression Profile

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