RNA id: TCONS_00003890


Basic Information

Item Value
RNA id TCONS_00003890
length 3751
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_001993
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15454745 ~ 15599149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCCTGAGCTGCGGTGAGGATGAGTAGCAAGCGGAGTCTGTTTGTGCGGTTGGTGCCGTGCCGCTGCCTCCTGGAGCAGGTCCCTAAAGAGATCTTCAGCTTCGAGAAGACCCTGGAGGAGCTCTACCTCGACGCCAACCAGATCGAGGAGCTGCCCAAACAACTTTTCAACTGCCAGTTGCTCTACCGATTGAGTCTACCGGACAACGACCTAACAGTTTTGCCACCGGGCATCGCAAACCTCATCAATCTCAGGGAGCTCGACGTCAGCAAGAACGGCATCCAGGAGTTTCCTGAAAATATCAAGAACTGCAAAGTCCTGGCCATCGTGGAAGCTAGCGTGAACCCCATATCAAAGCTCCCAGAAGGCTTCACGCAGCTCCTCAGCCTGTCCCAGCTCTACCTGAATGATGCCTTCCTTGAGTTTCTACCAGCCAGCTTCGGCAGATTAACCAAACTGCAGATTCTAGAACTGCGGGAGAACCAGTTAAAGATGTTGCCAAAgagcATGCATAAGCTCACGCAGCTGGAGCGTCTGGATCTGGGCAGTAATGAGTTCACTGAAGTGCCTGAAGTATTGGAGCAGCTTACAGGAATCAGAGAGCTGTGGATGGATGGGAATAAGCTGACGTTTGTACCAGGGaTGATTGGGGCGCTGAAGCAGCTTTCCTATCTGGACGTGTCCAAAAACAATGTGGAGATGGTGGAGGAGCAGATATCAGGCTGTGAAAACCTGCAGGATCTGCTGCTGTCCAACAATGCACTGACGCAGCTTCCGGGATCTATagGCTCCCTGAAAAAACTAAGCACTCTGAAGGTGGATGATAACCAGCTCATGTACCTGCCTGACACCATAGGCGGACTCTCGCATCTGGATGAGCTGGACTGCAGCTTTAATGAGATCGAGGCTCTGCCTTCCTCCATCGGCCAGTGTGTAAATCTGCGGACATTTGCTGCCGACCACAACCTGCTCGCTCAGATGCCTCCAGAGATGGGCAGTTTGAAAAACGTGACCGTTCTCTTCCTGCACTCAAACAAGCTGGAGAATCTGCCGGAGGAGATGGGCGACATGCAGAAACTCAAGGTCATCAATCTCAGCGACAACAAGCTGAGGAACCTTCCATACAGCTTCACTAAACTCAATCAGATGACTGCGATGTGGCTGTCTGAAAACCAGtcgAAGCCCCTCATTCCCCTGCAAAAAGAGGAGGATCCGGAGACGCACAAGATTGTACTGACGAACTACATGTTCCCTCAGCAGACCAGAACTGAGGAATACGTGCCCAACTCTGACAGTGAGAGCTTTAACCCGTCTCTGTGGGAGGAGCAGCGTAAGCAGCGAGCGCAAGTGGCGTTCGAGTGTGACGAGGACAAGGATGAGAGAGAAATGCCGCCGCGGgAAGGCAATCTAAAGCGATACCCCACACCATACCCTGACGAACTAAAGAACATGGTGAAAACGGCTCAGTCCGTGGCTCATAGACTCAAAGAGGATGAGTCCGGGGATGAGGCTGGAAAAGAGCCCAGGGTCAGCGAGAGGAACCATATCGGAGTGCAGGACGTTGGAGTGAAGgtGATTGAAAGTCCTTGCACCAATGGTAAACCCGCTGAAATGGATCCTAAAGCAGCAATGAACAGCAATCACAATTACGAACCGATAGATTCAGTAGACAACCACAGCATTGAGAGGATCCCTCTCAAGACCTCAGACAACATGAGAACTATGGTGAACCACGATGACACGCTTGAGGTACTGTATCATTGtttaaagagctcctattttgctttataaaagctcacattttggttttgggggtctccaacaacaggctgatatgtgTGCAAgttcaaaaaacactttttgttttataatatgcatttatttttacctaattatcccaacgactctcaTATGATTcggtcagtgattcatttgttcccaaacccctccttagcttgaagctaatctgcgctgattgatCCCATGACTcagtttgttgtgattggtcttTCAGTGCAGGatggagagaaatgcccaccacgccATCAGATGTGTAACTACACGGCTAAGTAGCacacagagtatgtgagagcccaaagcaggaatgcattaaagcaatgcagttaacaCCAGCATTACTCTATTGTTAACGCTGAAAATTGACTGTGCTGCGTGTGtatcagagatgggaagtaacgaagTGCAAATACTATGTTTCTGTACTTAAACAGATTTTTCTGGTATTagtactaaactttttttttggactactttttacttttactccttacatttttacacaaatatctgtactttctacttcttacatttttaaatcaggctCGTTACTTTCATTTTGATGTGTTTTGTGGCGCTATTTATAATATTTCTTGTCACTACACAATTGGAACGCCCTTTTCTTTCTGTCAATCTATTTGTCATTGCGTGCTGCAGTGCGTGGCTTTTTTAACCACCGATCGTGCACCGTAGGCTTATTTATTCAAGCTTAGCATGGGAACGGCTAACATGGAGGAGACGGGGGGAGTCCACGATGTAAACATGACTTATGTTTAAACCGGGTAATAAGATGCGTTTTGGTCGATTGGATTACAGGTAAATCAAAAGACGCACTACTGTTCAAATCTGGCATTTAAACGTGGCTAGAATCTTTTGTCCACTTCCGACTATGGTTTACTGTACATCTAATCTTTCAATCTAATACCatgaaaaaaaactaacaatcaTGTACTTTTTTGTCAACGTTGGTACAGTTAGTACCAAAGCAATTAAATCAGATGAACACGCTATGCAATGAGGTTTCTTTCCTTTGTTTTCAATGAGTTCCTGAAACATATTTTATTCTGTATTATAGTTTCAACATGTATATTATGTATACACTGTTGTcttcatttaaatttgttaaaaaaattgtgttacacaccgtctatagcaggggtgtcaaacttagttccaaaagggccaaagccctgcacagtttagttccaaccctgctccaacacagtTACCTGTAGGttacaaacaagcctgaaggactcaattagtttgatcaggtgtgtttaattagttggaactaaactgtgcagagctgcggcccttttggaactgagttaaCTGAgtgcacaacatgaaagacaagacaGCAAAAATGAAGTCAAAGATTTATTGGGGTTTGAATTCTGGGGCTGaccaggccaaaataacaaacaaaaattcctttATGTTAAATTTCTAACTTACCTgatcaaaaagaaaagaaagtacaatTCACTACCCTAACTACCTAACACAAAAACAGGTCAAAAGGTTTTACTAAGAAAATGGCGTTAAACTCCTTACTATCCCAATATATAGactatttacaaactatttacaaaaacaggcaACCATATTTGAAGGACAATCAAAAATCAATGTCAGCAGGCAACAAAGATCAAACAAGCCAGTGGAACAAAGTATCAtgaacaaagcaaacactaaaacaaacagtgttcacaattctcaatataatctcagtagtcacataaaacaaacagtactcacaaatctcaatattccCAGTCTTAACACATCCAAAAACTCTGCACTATACCACATACAAACGTTTCAACAAACACAAGCAAGTGAccaaaaacaagatggctgccaaggaagtagtgtcatggctttttaaaacactgtaggccaATCAGGAACAAGCAAGCTGGAAGTGGCCGATTAGATGGGTTct

Function

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0097120 receptor localization to synapse biological_process
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity biological_process
GO:0043113 receptor clustering biological_process
GO:0007165 signal transduction biological_process
GO:0009790 embryo development biological_process
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0005176 ErbB-2 class receptor binding molecular_function

KEGG:

id description
ko04621 NOD-like receptor signaling pathway

ZFIN:

id description
ZDB-GENE-061103-403 Predicted to enable ErbB-2 class receptor binding activity. Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and signal transduction. Predicted to be active in basolateral plasma membrane and cell junction. Is expressed in intestine. Orthologous to human ERBIN (erbb2 interacting protein).

Ensembl:

ensembl_id ENSDART00000165663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005694 lncRNA upstream 415623 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 423359 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 463103 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 469137 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005841 lncRNA upstream 480445 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00005695 lncRNA downstream 104389 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 225165 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 359530 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 359728 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00005846 lncRNA downstream 359989 15937765 ~ 15953470 (+) True XLOC_001997
TCONS_00003883 mRNA upstream 60668 15408501 ~ 15451217 (+) False XLOC_001992
TCONS_00003882 mRNA upstream 60668 15408501 ~ 15451217 (+) False XLOC_001992
TCONS_00003884 mRNA upstream 64305 15408590 ~ 15447580 (+) True XLOC_001992
TCONS_00003881 mRNA upstream 129760 15340769 ~ 15382125 (+) True XLOC_001991
TCONS_00003880 mRNA upstream 130000 15340768 ~ 15381885 (+) False XLOC_001991
TCONS_00003892 mRNA downstream 25306 15603082 ~ 15613302 (+) False XLOC_001994
TCONS_00003894 mRNA downstream 30550 15608326 ~ 15612215 (+) True XLOC_001994
TCONS_00003895 mRNA downstream 199288 15777064 ~ 15812946 (+) False XLOC_001996
TCONS_00003896 mRNA downstream 199482 15777258 ~ 15813279 (+) False XLOC_001996
TCONS_00003902 mRNA downstream 389565 15967341 ~ 15997705 (+) False XLOC_002001
TCONS_00003878 other upstream 207518 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003873 other upstream 223985 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003854 other upstream 1580167 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1617029 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 3178516 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003893 other downstream 25308 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 376803 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 376951 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003900 other downstream 383059 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003910 other downstream 459131 16036907 ~ 16040208 (+) True XLOC_002003

Expression Profile

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