RNA id: TCONS_00003880


Basic Information

Item Value
RNA id TCONS_00003880
length 1681
RNA type mRNA
GC content 0.47
exon number 12
gene id XLOC_001991
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15340768 ~ 15382125 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCACAAATGACAGAGATACTTTACAGCTGGCCAGGCGTGTTTTATGTAACGTTAACAATTTCTTTTATTATCTCTAATGTCATTTCAGAGACAGGAAACATTTTAACCATCTACCAGCGTAGAGTTCATTTTATTACCGTTGATGGGAAGTGCTGCAGCGTTATTTACTGACGGCTGCTGCAACGCGCTTTGTCCCTCTGTGCTCGCCGTGAGCAGCTGATTTGCAGGTGAGAGGTCTAGCCACTGCAGCAGACAAGATGGATGTCAACCAGGCAAAACAAGAGCATCTTCTGGCATTAAAAGTTATGCGGCTGACCAAACCTACACTTTTTACAAATATGCCAGTAACCTGTGAGGACAGAGATCTTCCAGGTGATTTGTTTTTACGACTCATGAAAGATGATCCATCCACTGTAAAGGGGGCAGAAACACTAATCCTTGGGGAGATGCTCACACTGCCACAGAACTTTGGAAATATTTTCCTTGGCGAGACCTTCTCCAGTTACATCAGTGTGCACAACGACAGCAGTCAAGTGGTCAAAGACATCCTGGTGAAGGCGGACCTGCAGACGAGCTCTCAGAGGTTAAATTTGTCGGCGTCAAACTCCGCCGTTTCAGAGCTCAAGCCCGAGTGCTGCATTGATGATGTCATCCATCATGAAGTCAAGGAGATTGGGACACATATCTTAGTCTGCGCAGTCAGTTACACCACTCAGACCGGCGAGAAGCTTTACTTTAGAAAGTTCTTCAAATTTCAGGTTCTCAAGCCTCTAGATGTAAAAACCAAATTCTACAATGCCGAGACAGATGAGGTGTTTTTAGAGGCGCAGATCCAGAACATCACCACATCTCCAATGTTCATGGAAAAAGTGTCCCTTGAACCTTCTATGATGTACAACGTCACTGAGCTCAACAATGTGGCGTCTGGAGATGAGAGCAGCGAGTCAACATTTGGGAAGATGTCGTATCTGCAGCCCTTGGACACGAGGCAGTATTTGTACTGTTTGAAGCCCAAGCCAGAGTTTGCAGAGAAGGCCGGGGTCATCAAAGGAGTCACGGTCATCGGCAAACTAGACATTGTGTGGAAAACCAACCTTGGGGAGAGAGGACGACTGCAGACCAGTCAACTGCAGAGAATGGCTCCTGGTTATGGGGACGTCAGGCTTTCTCTGGAGTTCATCCCAGACACAGTGGATCTAGAGGAGCCCTTCGACATCACCTGTAAAATCACCAACTGCAGTGAGCGGACCATGGATCTGCTGCTGGAGATGTGTAACACTCGCTCCGTCCACTGGTGTGGGGTGTCCGGCAGACAGCTGGGCAAACTGAGCCCCAGCGCATCGCTCTCCATTCCACTCAAACTACTGTCGTCCGTTCAGGGTTTACAGAGCATATCCGGCCTGAGGCTCACAGACACCTTCCTGAAAAGAACGTATGAATATGACGACATTGCCCAGGTCTGTGTGGTGTGTCCTTACACCAGTCCAGAAAGCTGAACACAATCCCTGTCATATTTTACACTGTCTGTTTCAATGGACCAAACCCCCGTCAGTCCTGCACCTATTAATAGAACACCATCTGCTCTTTACCTTAAGCTTGATgttttaaaatgatcatttttaaagcccttaatgcttttaaCTGTCTatcaatgtaaataaaagtaaaataaacgaAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-9775 Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13).

Ensembl:

ensembl_id ENSDART00000046274

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005694 lncRNA upstream 244506 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 252242 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 291986 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 298020 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005841 lncRNA upstream 309328 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003891 lncRNA downstream 150431 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005695 lncRNA downstream 300280 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 421056 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 555421 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 555619 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00003879 mRNA upstream 26617 15310811 ~ 15314151 (+) True XLOC_001990
TCONS_00003877 mRNA upstream 35001 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003876 mRNA upstream 35001 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003875 mRNA upstream 35001 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003874 mRNA upstream 35624 15255198 ~ 15305144 (+) False XLOC_001989
TCONS_00003883 mRNA downstream 26616 15408501 ~ 15451217 (+) False XLOC_001992
TCONS_00003882 mRNA downstream 26616 15408501 ~ 15451217 (+) False XLOC_001992
TCONS_00003884 mRNA downstream 26705 15408590 ~ 15447580 (+) True XLOC_001992
TCONS_00003885 mRNA downstream 72860 15454745 ~ 15596098 (+) False XLOC_001993
TCONS_00003886 mRNA downstream 72971 15454856 ~ 15596510 (+) False XLOC_001993
TCONS_00003878 other upstream 36401 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003873 other upstream 52868 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003854 other upstream 1409050 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1445912 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 3007399 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003893 other downstream 221199 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 572694 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 572842 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003900 other downstream 578950 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003910 other downstream 655022 16036907 ~ 16040208 (+) True XLOC_002003

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04381131_04396006.mRNA True 1472 mRNA 0.47 12 CI01000304 4381131 ~ 4396075 (+)