RNA id: TCONS_00003879


Basic Information

Item Value
RNA id TCONS_00003879
length 1821
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_001990
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15310811 ~ 15314151 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTCAAGCTTAAGGGCAGAAGGCAAAGCCTTTTTCCCAACTATAAACTTGGGGTCACAGTCCCTGCTCCCAAAGATCCAGAGGACTCTGACCTTCCTTTTGGTCAGCACAATTGGGTTAAACCATGGAATTCGATGCAGGAGTTAAGTAAGGATATTTACGACATCTATGCAGAGTACGAAGATGATGAAGAGGATCGACTGTTCTCCACTCCTAGTAAACTGTCCTCTCCGGTTAAGAACTATATGCTCAACATCAACGTAGGAGGCAAGGTCTATCAGATCTCTTACAGGGTAGCAGCAAAGTATCCCAAGACCAGAATTGGCCGTCTTGCAACATATACGGACCACAACAGGAAACTTGACCTCTGTGATGATTACACCGTCCACAACAATGAGTTTTTCTTCGATAGGGACCCAGACGTCTTCCACAACATCTTTAACTTCTACAGGACTGGAGTTCTGTGGATAAAAGATGAACTGTGTCCACGCAATTTTTTGGAGGAGATCAACTATTGGGGTGTTCGTATCAAGAACACCCATCGCTGCTGTCGAATTTCATTTGAGGAACGGCAGGATGAGCTCAACGAACAGCTGAAGGTGCAGAGGGAACTTGAAGCAGAGGTGGAAACTGAGGAACATGAGGACTTGTTTCAGGACATGGCCTTTGGGCATACGCGTTTCCTCATTTGGAACATGATGGAGAAGCCCTTCTCGTCGATCATAGCCAAAATCATGGCAGTAGCTTCCAGTTTCTTCGTGCTGGTATCACTTGTGGCAATGACGCTCAACACGGTAGAGGAAATGCAATACATAACAACCAATGGACAACTAAGTGGAAAGACCTACTGTGAGTATGTCGAGACTTTCTGTATTGCATTTTTCACCATGGAATACCTGCTCCGGCTTGTGTCCACGCCAGACCTCACACGCTTTGGGAGAAGTGTGTTGAATGCTGTGGACCTGATTGCAATTCTTCCATTGTACCTTCAAATGGTTCTAGAGTCTTTTGAGAGTCATGACTACTGGAAACATGGTAGTGATATTGAGACAGTAGGACGGGTCGGTAAATTGGGCCAAGTTCTCAGAATCATGCGTCTGATGAGGATATTTCGTATCCTTAAATTAGCACGCCACTCTACTGGACTTCGAGCATTCGGCTTCACGCTTCGGCAATGTTACCAACAAGTGGGCTGTCTGTTCCTCTTCATTGCAATGGGAATCTTAACATTTTCGGCCATGGTGTATACCGTCGAGCATGATGTGCATAAAACAAACTTCACCAGCATTCCACATGCATGGTGGTGGGCAGCTGTGAGCATCTCTACAGTGGGCTATGGAGACATGTTTCCAGAGACCCATCTGGGCAGGATTTTTGCATTTGCATGCATCTCGTTTGGAATTATTCTCAACGGCATGCCGATCTCCATTCTGTTCAATAAATTCTCAGACTACTATTCAAAACTGAAAGCCTATGAATACACCTCCTCTATAAAGAATCGTGGGAAAGTGAGGTTTGTAAAAAGGGCTGCCAAGAGGTTTGCAGAATGTTTTTAGAACGCCATGAGCTGACCTACTCCATCCTCCTACAGGCTGATTTTTAATTCATGGACACGGCGGCCTGCCTTTCCAAAAATTTGCACCAAACAGACCGCCTTAGTATAACTGTCCTCACACAGACTAGTCATTGCTGTTTGTATAAAAACTCTGTCTCTTGTACTGCTGggataaaattatatttaggAACTTttgtattacttatttttttaggcAACTCTACCAGTGATGGATGCAGTTATTAAAAACTCCTCTTGGAATACA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-27 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in eye. Orthologous to human KCNV2 (potassium voltage-gated channel modifier subfamily V member 2).

Ensembl:

ensembl_id ENSDART00000136239

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005694 lncRNA upstream 214549 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 222285 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 262029 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 268063 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005841 lncRNA upstream 279371 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003891 lncRNA downstream 218165 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005695 lncRNA downstream 368014 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 488790 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 623155 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 623353 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00003877 mRNA upstream 5044 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003876 mRNA upstream 5044 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003875 mRNA upstream 5044 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003874 mRNA upstream 5667 15255198 ~ 15305144 (+) False XLOC_001989
TCONS_00003872 mRNA upstream 5670 15255012 ~ 15305141 (+) False XLOC_001989
TCONS_00003880 mRNA downstream 26617 15340768 ~ 15381885 (+) False XLOC_001991
TCONS_00003881 mRNA downstream 26618 15340769 ~ 15382125 (+) True XLOC_001991
TCONS_00003883 mRNA downstream 94350 15408501 ~ 15451217 (+) False XLOC_001992
TCONS_00003882 mRNA downstream 94350 15408501 ~ 15451217 (+) False XLOC_001992
TCONS_00003884 mRNA downstream 94439 15408590 ~ 15447580 (+) True XLOC_001992
TCONS_00003878 other upstream 6444 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003873 other upstream 22911 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003854 other upstream 1379093 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1415955 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2977442 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003893 other downstream 288933 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 640428 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 640576 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003900 other downstream 646684 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003910 other downstream 722756 16036907 ~ 16040208 (+) True XLOC_002003

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04365876_04367947.mRNA True 2076 mRNA 0.44 2 CI01000304 4365611 ~ 4368201 (+)