XLOC_002001 (apbb1)


Basic Information

Item Value
gene id XLOC_002001
gene name apbb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15967341 ~ 15997914 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003902
AATggttcaaatcaaattaaaataatacttcaaaTAATTACTTACTTAAAAAATTGATTAATAGAATGATTTAGCAAAATAAAGGAATTGTAAATTTATTCAGGTATAAAAAAAAACCCTCCCCTGTTCTTTCTTCTCGTAATTTCATTCCCTCCATTCTTATCATTTATCTTTTAATCTCACGCTTTTTCTACATTATGCGCTCCACACTCCTATCCAGTAAGAGGCGGGAATGCACTATGTAAGTTGGTCTGCCATGCGCCATTAACcccacaagaagaagaagaagtacgTCACTATGACGTTATGTGTGGGCTAGCTTTAGCAATGTTAGCCGTTTAACGGTGATGTAGTCAGTGTTTGATGATTTTTTAGGCGTTTTGACGCTGATCGATATTTATGAGGGGAATTTATTAACGCTCTGTGACATGTCGGTGAAGAGCCCATCAGATGTGCTCAATGAAAATGCATACATCTCATCCTCCCTGACCCTTGACCTCTGTTTATCACATGAAAAAAAGTTAGTTCTGAATGATACTTCTGGGTCTCAAAAGAGTCGTCATAATTACTCCAGCACAACTTCCATCCAGCTCCTCAAAGACATTATGGGAGGACTAGATGATGATGACGATGCATCCCTCCGACACCAAGAAGGTGAATGGAGCAGAAATCAGGAAAATGAACACAGTCTTTCTGAAAGTAAAACCAAGTGGATGAAGGATGATAAGAACCAGATATGCAAGTTAGCagagcaacagcagcagcaagACCAGAATTTAAACTTGGTCGAGAACAAGAATGAATCAACAGAGACGAATCCAAATCAGAACTCGCAGAGGCACCATGAAGAGAAGAACAAGACCCTTAACGCGCTCTGCTCTGACCTGAATGATTGGGGGGCTGATGAATCTGTACTGATTTACTCTTCTGTCATGATGGAGAAGAATCAGGAAGAATCAAGAGGTGTGGATGTTGAAGGAGAGGAAGAGGAAAATGTAGATCCTAGTGGAGGCGAGAACAGAGATTCATCTGAAATTCAAAAGAAACGTGCTGAAGGTAGTGGCAGAAATACTTGTCTGCTGTTCAGCAAGAATGGCATTCCTAGTGACGAGGACTCCAGCTGCATGTCACTGTCACAGGGAAGCACTGCAAGCAGCACCCCGGATGGTGAACCAGagTCCTATTGGGATGGTAGTGCATTTGAAACTGACACGGATCTTCCTGCTGGTTGGATGCGAGTGCAGGACACATCGGGCACCTACTATTGGCACATTCCTACAGGTACCACACAGTGGGAACCACCGGAGACACTGGAGGAGAGACCATCAAGTGCTTCACCTGCAGTCACACCCGCTGATGAGCCTCAGACGGAGGTTGTATCTTCTGATGAAAGTCTGAAGGAGTTTGAGGGAGCAACTCTACGCTATGCCTCAATCAATCTCAGTTTTTCTCAGACTGAGGAGGAAGAGGAACAGACTTGTTTCAGCAGTATTGAGGGTTCAAAGtgttttgCAGTGCGTTCTCTGGGCTGGGTGGAAATAACAGAAGAGGAAATGGCTCCTGGCAGGAGTAGTGTTGCTGTTAATAACTGCATCCGACAGTTGTCCTACCAGAAACACAATCTAGATGACACAGCTGGCATCTGGGGTGAGGGAAAGGAAATGTTGCTGGTGCTGGAAAATGAGATGCTGAATCTGTTTGAACCTCATGGACAAACACTGCTTCACTCACAGCCAATCGTTAGCATCCGTGTTTGGGGCGTCGGTCGTGATGATGGCAGGGACTTTGCATATGTGGCCAGGGACAAGTTAACACATGTGCTCAAGTGTCATGTATTTCGATGTGACACCCCGGCAAAAAACATCGCCACAAGCATGCATGAGATCTGCTCTAAGATTATGGCTCAGAGGAAGTCATCAAGCAGACTAAACTCTGACCCCTCAAGACTAAGAGACATCCCTTTTCAAGAGTTCCCAGTTCCCAAGAATGAGCTGGTCCAACGATTCCAAGTGCGATATTTGGGTCGTGTGCAAGTGACAAAGCCAGTTGGGATGGAAGTTATTAATGTAGCACTGGAGACTGCCCTGAACAAAGACAAGGAGGATTGGACACCTGTGACTGTAAACGTGGCCTCTGCTACGCTTACTGTTCTAACATCTGagACAGAGGAAGTTCTCTCTGAGTGTCGTGTGCGTTTCCTGTCATTTATGGGAGTCGGGAAAGACGTTCACACCTTTGCGTTCATCATGGCAGAGGGACCTGGAGACTTTATATGTCACATGTTCTGGTGTGATCCAAATGCAGCCAGTCTAAGTGAGGCCGTACAGGCTGCCTGCATGCTAAGGTATCAGAAGTGTTTGGATGCTCGTCCTCCCATCAGTGGCAGCTCTTGTCTGCCAGGCCCACCTGCCGATTCTGTGGCACGCAGAGTTGGCTCAAGCGTGAAGAAGGGTGTTCAGAGTCTGCTGGGTAGCTTCAAGAGATCTGGATCCCAGACCCCCTAA
>TCONS_00003901
AATggttcaaatcaaattaaaataatacttcaaaTAATTACTTACTTAAAAAATTGATTAATAGAATGATTTAGCAAAATAAAGGAATTGTAAATTTATTCAGGTATAAAAAAAAACCCTCCCCTGTTCTTTCTTCTCGTAATTTCATTCCCTCCATTCTTATCATTTATCTTTTAATCTCACGCTTTTTCTACATTATGCGCTCCACACTCCTATCCAGTAAGAGGCGGGAATGCACTATGTAAGTTGGTCTGCCATGCGCCATTAACcccacaagaagaagaagaagtacgTCACTATGACGTTATGTGTGGGCTAGCTTTAGCAATGTTAGCCGTTTAACGGTGATGTAGTCAGTGTTTGATGATTTTTTAGGCGTTTTGACGCTGATCGATATTTATGAGGGGAATTTATTAACGCTCTGTGACATGTCGGTGAAGAGCCCATCAGATGTGCTCAATGAAAATGCATACATCTCATCCTCCCTGACCCTTGACCTCTGTTTATCACATGAAAAAAAGTTAGTTCTGAATGATACTTCTGGGTCTCAAAAGAGTCGTCATAATTACTCCAGCACAACTTCCATCCAGCTCCTCAAAGACATTATGGGAGGACTAGATGATGATGACGATGCATCCCTCCGACACCAAGAAGGTGAATGGAGCAGAAATCAGGAAAATGAACACAGTCTTTCTGAAAGTAAAACCAAGTGGATGAAGGATGATAAGAACCAGATATGCAAGTTAGCagagcaacagcagcagcaagACCAGAATTTAAACTTGGTCGAGAACAAGAATGAATCAACAGAGACGAATCCAAATCAGAACTCGCAGAGGCACCATGAAGAGAAGAACAAGACCCTTAACGCGCTCTGCTCTGACCTGAATGATTGGGGGGCTGATGAATCTGTACTGATTTACTCTTCTGTCATGATGGAGAAGAATCAGGAAGAATCAAGAGGTGTGGATGTTGAAGGAGAGGAAGAGGAAAATGTAGATCCTAGTGGAGGCGAGAACAGAGATTCATCTGAAATTCAAAAGAAACGTGCTGAAGGTAGTGGCAGAAATACTTGTCTGCTGTTCAGCAAGAATGGCATTCCTAGTGACGAGGACTCCAGCTGCATGTCACTGTCACAGGGAAGCACTGCAAGCAGCACCCCGGATGGTGAACCAGagTCCTATTGGGATGGTAGTGCATTTGAAACTGACACGGATCTTCCTGCTGGTTGGATGCGAGTGCAGGACACATCGGGCACCTACTATTGGCACATTCCTACAGGTACCACACAGTGGGAACCACCGGAGACACTGGAGGAGAGACCATCAAGTGCTTCACCTGCAGTCACACCCGCTGATGAGCCTCAGATTGCATGGAATGATGTTTCACACCAGAACACATTCAGTGGTGATGAACTCTGGCAGACGGAGGTTGTATCTTCTGATGAAAGTCTGAAGGAGTTTGAGGGAGCAACTCTACGCTATGCCTCAATCAATCTCAGTTTTTCTCAGACTGAGGAGGAAGAGGAACAGACTTGTTTCAGCAGTATTGAGGGTTCAAAGtgttttgCAGTGCGTTCTCTGGGCTGGGTGGAAATAACAGAAGAGGAAATGGCTCCTGGCAGGAGTAGTGTTGCTGTTAATAACTGCATCCGACAGTTGTCCTACCAGAAACACAATCTAGATGACACAGCTGGCATCTGGGGTGAGGGAAAGGAAATGTTGCTGGTGCTGGAAAATGAGATGCTGAATCTGTTTGAACCTCATGGACAAACACTGCTTCACTCACAGCCAATCGTTAGCATCCGTGTTTGGGGCGTCGGTCGTGATGATGGCAGGGACTTTGCATATGTGGCCAGGGACAAGTTAACACATGTGCTCAAGTGTCATGTATTTCGATGTGACACCCCGGCAAAAAACATCGCCACAAGCATGCATGAGATCTGCTCTAAGATTATGGCTCAGAGGAAGTCATCAAGCAGACTAAACTCTGACCCCTCAAGACTAAGAGACATCCCTTTTCAAGAGTTCCCAGTTCCCAAGAATGAGCTGGTCCAACGATTCCAAGTGCGATATTTGGGTCGTGTGCAAGTGACAAAGCCAGTTGGGATGGAAGTTATTAATGTAGCACTGGAGACTGCCCTGAACAAAGACAAGGAGGATTGGACACCTGTGACTGTAAACGTGGCCTCTGCTACGCTTACTGTTCTAACATCTGagACAGAGGAAGTTCTCTCTGAGTGTCGTGTGCGTTTCCTGTCATTTATGGGAGTCGGGAAAGACGTTCACACCTTTGCGTTCATCATGGCAGAGGGACCTGGAGACTTTATATGTCACATGTTCTGGTGTGATCCAAATGCAGCCAGTCTAAGTGAGGCCGTACAGGCTGCCTGCATGCTAAGGTATCAGAAGTGTTTGGATGCTCGTCCTCCCATCAGTGGCAGCTCTTGTCTGCCAGGCCCACCTGCCGATTCTGTGGCACGCAGAGTTGGCTCAAGCGTGAAGAAGGGTGTTCAGAGTCTGCTGGGTAGCTTCAAGAGATCTGGATCCCAGACCCCCTAA
>TCONS_00003903
CGTTATGTGTGGGCTAGCTTTAGCAATGTTAGCCGTTTAACGGTGATGTAGTCAGTGTTTGATGATTTTTTAGGCGTTTTGACGCTGATCGATATTTATGAGGGGAATTTATTAACGCTCTGTGACATGTCGGTGAAGAGCCCATCAGATGTGCTCAATGAAAATGCATACATCTCATCCTCCCTGACCCTTGACCTCTGTTTATCACATGAAAAAAAGTTAGTTCTGAATGATACTTCTGGGTCTCAAAAGAGTCGTCATAATTACTCCAGCACAACTTCCATCCAGCTCCTCAAAGACATTATGGGAGGACTAGATGATGATGACGATGCATCCCTCCGACACCAAGAAGGTGAATGGAGCAGAAATCAGGAAAATGAACACAGTCTTTCTGAAAGTAAAACCAAGTGGATGAAGGATGATAAGAACCAGATATGCAAGTTAGCagagcaacagcagcagcaagACCAGAATTTAAACTTGGTCGAGAACAAGAATGAATCAACAGAGACGAATCCAAATCAGAACTCGCAGAGGCACCATGAAGAGAAGAACAAGACCCTTAACGCGCTCTGCTCTGACCTGAATGATTGGGGGGCTGATGAATCTGTACTGATTTACTCTTCTGTCATGATGGAGAAGAATCAGGAAGAATCAAGAGGTGTGGATGTTGAAGGAGAGGAAGAGGAAAATGTAGATCCTAGTGGAGGCGAGAACAGAGATTCATCTGAAATTCAAAAGAAACGTGCTGAAGGTAGTGGCAGAAATACTTGTCTGCTGTTCAGCAAGAATGGCATTCCTAGTGACGAGGACTCCAGCTGCATGTCACTGTCACAGGGAAGCACTGCAAGCAGCACCCCGGATGGTGAACCAGagTCCTATTGGGATGGTAGTGCATTTGAAACTGACACGGATCTTCCTGCTGGTTGGATGCGAGTGCAGGACACATCGGGCACCTACTATTGGCACATTCCTACAGGTACCACACAGTGGGAACCACCGGAGACACTGGAGGAGAGACCATCAAGTGCTTCACCTGCAGTCACACCCGCTGATGAGCCTCAGACGGAGGTTGTATCTTCTGATGAAAGTCTGAAGGAGTTTGAGGGAGCAACTCTACGCTATGCCTCAATCAATCTCAGTTTTTCTCAGACTGAGGAGGAAGAGGAACAGACTTGTTTCAGCAGTATTGAGGGTTCAAAGtgttttgCAGTGCGTTCTCTGGGCTGGGTGGAAATAACAGAAGAGGAAATGGCTCCTGGCAGGAGTAGTGTTGCTGTTAATAACTGCATCCGACAGTTGTCCTACCAGAAACACAATCTAGATGACACAGCTGGCATCTGGGGTGAGGGAAAGGAAATGTTGCTGGTGCTGGAAAATGAGATGCTGAATCTGTTTGAACCTCATGGACAAACACTGCTTCACTCACAGCCAATCGTTAGCATCCGTGTTTGGGGCGTCGGTCGTGATGATGGCAGGGACTTTGCATATGTGGCCAGGGACAAGTTAACACATGTGCTCAAGTGTCATGTATTTCGATGTGACACCCCGGCAAAAAACATCGCCACAAGCATGCATGAGATCTGCTCTAAGATTATGGCTCAGAGGAAGTCATCAAGCAGACTAAACTCTGACCCCTCAAGACTAAGAGACATCCCTTTTCAAGAGTTCCCAGTTCCCAAGAATGAGCTGGTCCAACGATTCCAAGTGCGATATTTGGGTCGTGTGCAAGTGACAAAGCCAGTTGGGATGGAAGTTATTAATGTAGCACTGGAGACTGCCCTGAACAAAGACAAGGAGGATTGGACACCTGTGACTGTAAACGTGGCCTCTGCTACGCTTACTGTTCTAACATCTGagACAGAGGAAGTTCTCTCTGAGTGTCGTGTGCGTTTCCTGTCATTTATGGGAGTCGGGAAAGACGTTCACACCTTTGCGTTCATCATGGCAGAGGGACCTGGAGACTTTATATGTCACATGTTCTGGTGTGATCCAAATGCAGCCAGTCTAAGTGAGGCCGTACAGGCTGCCTGCATGGCTAAGGTATCAGAAGTGTTTGGATGCTCGTCCTCCCATCAGTGGCAGCTCTTGTCTGCCAGGCCCACCTGCCGATTCTGTGGCACGCAGAGTTGGCTCAAGCGTGAAGAAGGGTGTTCAGAGTCTGCTGGGTAGCTTCAAGAGATCTGGATCCCAGACCCCCTAAAAAGGGTAACACTCCCTCATCGGCGCTCAGTGCAAATATGTATTTCTtccttgtgtgtgttttatgggCCTGAAAGTAGAGGGGTGTTTTAGAAGGTCGTGCTATTTCAGCGGTCATCTTGCAGTTATCACAAATTGACCAAGAGGACACAAATTGTTCCTATATATTTCCCTATTGTACACTACATTTCCTCCCACATGTTTGTTAGT
>TCONS_00003904
GTGCGTTCTCTGGGCTGGGTGGAAATAACAGAAGAGGAAATGGCTCCTGGCAGGAGTAGTGTTGCTGTTAATAACTGCATCCGACAGTTGTCCTACCAGAAACACAATCTAGATGACACAGCTGGCATCTGGGGTGAGGGAAAGGAAATGTTGCTGGTGCTGGAAAATGAGATGCTGAATCTGTTTGAACCTCATGGACAAACACTGCTTCACTCACAGCCAATCGTTAGCATCCGTGTTTGGGGCGTCGGTCGTGATGATGGCAGGGACTTTGCATATGTGGCCAGGGACAAGTTAACACATGTGCTCAAGTGTCATGTATTTCGATGTGACACCCCGGCAAAAAACATCGCCACAAGCATGCATGAGATCTGCTCTAAGATTATGGCTCAGAGGAAGTCATCAAGCAGACTAAACTCTGACCCCTCAAGACTAAGAGACATCCCTTTTCAAGAGTTCCCAGTTCCCAAGAATGAGCTGGTCCAACGATTCCAAGTGCGATATTTGGGTCGTGTGCAAGTGACAAAGCCAGTTGGGATGGAAGTTATTAATGTAGCACTGGAGACTGCCCTGAACAAAGACAAGGAGGATTGGACACCTGTGACTGTAAACGTGGCCTCTGCTACGCTTACTGTTCTAACATCTGagACAGAGGAAGTTCTCTCTGAGTGTCGTGTGCGTTTCCTGTCATTTATGGGAGTCGGGAAAGACGTTCACACCTTTGCGTTCATCATGGCAGAGGGACCTGGAGACTTTATATGTCACATGTTCTGGTGTGATCCAAATGCAGCCAGTCTAAGTGAGGCCGTACAGGCTGCCTGCATGGTGAGCAAGGAATACCTAGTACATTCTTTACATACTTGCCCATTACTATACTATACAATTAAATGAAGTTGCCCCAGATGTGGATGAGACTGAAATATTCACGTGCTGCTTGTAAAACTAGCATTACATTTTTAGTTCAAGCAGCTGTAAAACTGTTGTTAGAGGAATGAGTATCATGCAGgtggaacacaaaataagatgaatAAATTGTTTATGCTTTTCATACAA

Function

symbol description
apbb1 Predicted to enable amyloid-beta binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human APBB1 (amyloid beta precursor protein binding family B member 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0001540 amyloid-beta binding molecular_function

KEGG:

id description
ko05010 Alzheimer disease
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-091118-127 Predicted to enable amyloid-beta binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human APBB1 (amyloid beta precursor protein binding family B member 1).

Ensembl:

ensembl_id ENSDARG00000076560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003902 False 2504 mRNA 0.46 13 15967341 15997705
TCONS_00003901 False 2561 mRNA 0.46 14 15967341 15997705
TCONS_00003903 False 2412 mRNA 0.47 13 15967643 15997914
TCONS_00003904 True 1053 lncRNA 0.45 7 15986197 15993262

Neighbor

gene id symbol gene type direction distance location
XLOC_002000 dre-mir-24-1 coding upstream 6427 15960835 ~ 15960914 (+)
XLOC_001999 dre-mir-27d coding upstream 12526 15954727 ~ 15954815 (+)
XLOC_001998 dre-mir-23b coding upstream 12682 15954579 ~ 15954659 (+)
XLOC_001997 NA coding upstream 13871 15937306 ~ 15953470 (+)
XLOC_001996 apba1b coding upstream 154062 15777064 ~ 15813279 (+)
XLOC_002002 phax coding downstream 31346 16029260 ~ 16035413 (+)
XLOC_002003 lmnb1 coding downstream 38332 16036246 ~ 16056908 (+)
XLOC_002004 megf10 coding downstream 72073 16069987 ~ 16161040 (+)
XLOC_002005 prrc1 coding downstream 167619 16165533 ~ 16187800 (+)
XLOC_002006 ctxn3 coding downstream 190847 16188761 ~ 16192613 (+)
XLOC_001995 NA non-coding upstream 284870 15682165 ~ 15682471 (+)
XLOC_002008 NA non-coding downstream 376946 16374860 ~ 16396280 (+)
XLOC_002011 CR790388.2 non-coding downstream 577164 16575078 ~ 16575175 (+)
XLOC_002017 NA non-coding downstream 1089340 17087254 ~ 17087788 (+)
XLOC_002019 BX324123.6 non-coding downstream 1122003 17119917 ~ 17120049 (+)
XLOC_002020 BX324123.5 non-coding downstream 1125454 17123368 ~ 17123500 (+)

Expression


Co-expression Network