XLOC_002002 (phax)


Basic Information

Item Value
gene id XLOC_002002
gene name phax
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16029260 ~ 16035413 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003905
GCGGCCAATGAGTGCACGCGCTCAAGTGTATGCATCTGCGCGTCTTCCGGCTGGGAAACGGCGGGTGATAGAGACACAATGGCGGATCTTGAGGATGGAGAGATTAGTTCTGATCAAGAGTCGGAAATGCGGGATGTTGCTGCGGAGCGAGTGCAGGTGTCATCTTTTCAGAGCAGAGGATCTTCTTTAGGTGGTGCACCCATCACAGAATACCGCAACTTAAAGAACATGGAGTCTAGTGACAGCAACTCTGACTCTGAAGATGAGGCCATTCTGTGGAAAAGAAAACGACTAAAATGTTCCAGTATACCAGCTCCTCTTCAGGCCAAGCCTAATGCAAGAACTGCAACAAACCCCTTTGCTCGCAAAGTCAACAACATCTGGGGTTCTGTGGTTCAGGAGCAAAGTCAGGAAGCTGTTGCAGCAGAGCTAGGCATCATGGGAATGGAAGGTGCTGTCAGCATGAGCAGTCGCCAGAGCGAGACTTATAATTATGTCTTTGCTCGCAAGATGATGGCAAAAGAGcgtgatgaggaggaggaaggGTTGAAGAGCACTTTGGACAGTGAGCTGGAGGGATACATGCAGCAGGGAGGACAAGACCAAAAAGACAGTAGCCATCTGAAAAGAAAGCGGCCAGCCAAGGAAAGACTCGGCCCCAGGGCTGAGATGGACTTGAAGGGTCGATATGAGATCAAAGAAGATGACCCTGAAGAGAGAGTGATCGATGAAATCGCACACAGACTCATGGAGCCCAAGAAAGATCTAATAGAACGTGTGGTCAGAGTTATAGGAAATAAGAAAGCCATCGAGCTGCTGTCTGAGACTGCAACAATTGAACAAAGTGGAGGTCTTTACACTGTGGATGGCAGTAGGAGGCGGACACCAGGTGGGGTGTATCTTAACCTGCTGAAGAATACACCAAGCATTTCTCATGGGCAAGTAAAGGAGATTTTTCATGAAGAGAACCAGAAAGAATGCAACAGCAAAAAGGCTGCGAAGAAGCGACGGAGGCAAATAGTAGCAAAGAAGATGAAGCAAGCCATCGGCACACTCAATCTACAGGAACAAGATGACATCTCAAGAGAAACATTTGCTAGTGACACTGAGGAGGCTCTGGTTTCCCTAGAAGAGGCCCCTGAAGCCCCATCAGAACATGCATTAGGAACAGAGGACAACCCTGTAGTGTACAACTCAAATGATCTAGAAGTTTTCTAAATTGCTGTGCTTCAGAGTGTTGTACTTTATTGTCCGTTCTGGGATAATTTGGACCATCTAGCTGAAAAATCTTTTGGGATTTGTCCTGAATTAGTAAGAGTGGTCAAGAAAGACTGATGTTGTTTTGATGATGTTCTAATGTTTATGTATAGCACTTTTAAGTTTTCTACTGAGTGTTGAACGCTAGCTCTTTAAAATACTATCAGAAGCAGCCAAATGTTGTACAGCTTTTCTACAGGAAGTCTTGGCTGGTTTGATGTTGACCCATTGTAATTTTTTCCCTCTCTGAATACTTTGCAAGCTTTTGACACATTACATTCTtggataacaataaataaatgttcaagtATGAATGCACTTTCAGTTGAATACTTAATATGCCGAGAAACATGTTACGTTGTGAATGCTGTACAGTTACAGTAATGTGGTACAtgctttaattttaattgtacTAGTTAATGTCAGTAATGGTTTAAAttggttttaatttagtttaagtttaGTTGTAGTCGTATGTTGCACATCTGTtttgatttattaaactgatGTTTCAGTTTATACACGAAGG

Function

symbol description
phax Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export).

GO:

id name namespace
GO:0006408 snRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport

ZFIN:

id description
ZDB-GENE-040822-42 Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export).

Ensembl:

ensembl_id ENSDARG00000044298

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003905 True 1786 mRNA 0.43 5 16029260 16035413

Neighbor

gene id symbol gene type direction distance location
XLOC_002001 apbb1 coding upstream 31346 15967341 ~ 15997914 (+)
XLOC_002000 dre-mir-24-1 coding upstream 68346 15960835 ~ 15960914 (+)
XLOC_001999 dre-mir-27d coding upstream 74445 15954727 ~ 15954815 (+)
XLOC_001998 dre-mir-23b coding upstream 74601 15954579 ~ 15954659 (+)
XLOC_001997 NA coding upstream 75790 15937306 ~ 15953470 (+)
XLOC_002003 lmnb1 coding downstream 833 16036246 ~ 16056908 (+)
XLOC_002004 megf10 coding downstream 34574 16069987 ~ 16161040 (+)
XLOC_002005 prrc1 coding downstream 130120 16165533 ~ 16187800 (+)
XLOC_002006 ctxn3 coding downstream 153348 16188761 ~ 16192613 (+)
XLOC_002007 slc12a2 coding downstream 189704 16225117 ~ 16310179 (+)
XLOC_001995 NA non-coding upstream 346789 15682165 ~ 15682471 (+)
XLOC_002008 NA non-coding downstream 339447 16374860 ~ 16396280 (+)
XLOC_002011 CR790388.2 non-coding downstream 539665 16575078 ~ 16575175 (+)
XLOC_002017 NA non-coding downstream 1051841 17087254 ~ 17087788 (+)
XLOC_002019 BX324123.6 non-coding downstream 1084504 17119917 ~ 17120049 (+)
XLOC_002020 BX324123.5 non-coding downstream 1087955 17123368 ~ 17123500 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G418271 NA non-coding CI01000304 null 292906 ~ 306910 (-)