RNA id: TCONS_00003924



Basic Information


Item Value
RNA id TCONS_00003924
length 98
RNA type miRNA
GC content 0.59
exon number 1
gene id XLOC_002011
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16575078 ~ 16575175 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


caggttctctggcttgacgtcccggtgcaggacaCCACGGCTCTCACAGTGTTTCAGCGCTgcgatcagctgcaccagcactttcttggtCAGACGCT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000125780

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005848 lncRNA upstream 178798 16374860 ~ 16396280 (+) True XLOC_002008
TCONS_00005847 lncRNA upstream 197842 16374860 ~ 16377236 (+) False XLOC_002008
TCONS_00003912 lncRNA upstream 478705 16070017 ~ 16096373 (+) False XLOC_002004
TCONS_00003904 lncRNA upstream 581816 15986197 ~ 15993262 (+) True XLOC_002001
TCONS_00005844 lncRNA upstream 621608 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005696 lncRNA downstream 512079 17087254 ~ 17087788 (+) True XLOC_002017
TCONS_00005697 lncRNA downstream 522828 17098003 ~ 17100587 (+) True XLOC_002018
TCONS_00005849 lncRNA downstream 660102 17235277 ~ 17243055 (+) False XLOC_002023
TCONS_00005698 lncRNA downstream 660127 17235302 ~ 17243055 (+) False XLOC_002023
TCONS_00005850 lncRNA downstream 686310 17261485 ~ 17262255 (+) True XLOC_002024
TCONS_00003923 mRNA upstream 11125 16547259 ~ 16563953 (+) True XLOC_002010
TCONS_00003922 mRNA upstream 34475 16501699 ~ 16540603 (+) True XLOC_002009
TCONS_00003919 mRNA upstream 264899 16225117 ~ 16310179 (+) False XLOC_002007
TCONS_00003921 mRNA upstream 268161 16225870 ~ 16306917 (+) True XLOC_002007
TCONS_00003920 mRNA upstream 310754 16225553 ~ 16264324 (+) False XLOC_002007
TCONS_00003925 mRNA downstream 9207 16584382 ~ 16587854 (+) True XLOC_002012
TCONS_00003926 mRNA downstream 17676 16592851 ~ 16703733 (+) False XLOC_002013
TCONS_00003927 mRNA downstream 17743 16592918 ~ 16748593 (+) True XLOC_002013
TCONS_00003928 mRNA downstream 181371 16756546 ~ 16757842 (+) True XLOC_002014
TCONS_00003929 mRNA downstream 336776 16911951 ~ 17019944 (+) True XLOC_002015
TCONS_00003910 other upstream 534870 16036907 ~ 16040208 (+) True XLOC_002003
TCONS_00003900 other upstream 614164 15960835 ~ 15960914 (+) True XLOC_002000
TCONS_00003899 other upstream 620263 15954727 ~ 15954815 (+) True XLOC_001999
TCONS_00003898 other upstream 620419 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003893 other upstream 969935 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003933 other downstream 544742 17119917 ~ 17120049 (+) True XLOC_002019
TCONS_00003934 other downstream 548193 17123368 ~ 17123500 (+) True XLOC_002020
TCONS_00003935 other downstream 550165 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003936 other downstream 552141 17127316 ~ 17127448 (+) True XLOC_002022
TCONS_00003939 other downstream 878188 17453363 ~ 17453503 (+) True XLOC_002029

Expression Profile


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