XLOC_002009 (slc27a6)


Basic Information

Item Value
gene id XLOC_002009
gene name slc27a6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 16501699 ~ 16540603 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003922
GTTTTATAACATCCATTGAAGAACTTACCCTGAGCCACTATAACAATGTCAACGGTTTGACAGCTTTAACCAGGTCTCTGCGTGTTTATTTTTTCCAGAGATGTTGTCATGGATCGCGGCATTGCTGACAGGAATCCTCACCGCGCATCTCGCACAGCGCCTGTGTTTTCCATACTTCTGGAAAGACGCTCTTTATTTAATGAAAGTCATACGATACGGAGCGCGTCTGGAAATTTACAAAAGGACCTCACTGATCGTAACGATCGTAGACCGGTTTGTTCAACAAGCACAGCGGTTTCCTGAAAAACCGTTTGTGATTTTTGAAGGAGTGACGTACACTTATGGAGACCTCGAGGCGCGCAGCAACAGGGTCGCGCGCTTGTTTCAAGACACGGTGAAAAAAGGAGACACGGTCGCGCTCCTCATGAACAACGAGCCCGATTTCATCTCGGTCTGGTTCGGGTTCTGTAAACTGGGCTGTGCTTTGGCGTTTCTCAACACAAACATCAAATCCAGGTCGCTGCTACACTGTTTTAACTGCTGTGGGGCCAAACAACTGGTGGTCGGAGCAGATCTTCTGGACAATTTAGAGGACATTCTTCCCAGTCTCCAGGAGGACAATATCACAGTTTGGTCTTTGGGTCATGGAAATTCTCATCCTGGGGTCCACAGCCTGCTAGATAAAATTGAGAAATCTTCACAGGAGCCAATTGCAGCTAAGCGCAGGTCCATCTCCTGTCTCAAAACCCCCACTCTCTACATCTTCACTTCAGGCACAACTGGGCTACCCAAAGCTGCAGTCATCACTCATTTGCAGTCCCTGAAGGCAGCAGGTGGATTTTGGGCATATGGCGGTACAGAAAAGGATGTAATCTATACCCCACTTCCCTTGTATCACAGTGCTGCCTCACTTGTAGGCATTGGAGGGACCATTGAATTAGGTGCCACTTGTATTCTAAAGAAGAAGTTTTCTGCCTCTCAGTTCTGGAATGACTGCAGGAAATACAACGTCACCATTTTTCAGTACATAGGAGAGCTGTGCCGATATCTGTGCAATCAGCCTATGGGTGAAAATGAGAAGGATCACAAGGTGCACATGGGTGTTGGGAACGGACTCCGGCAGGACGTATGGAGAGAATTCCTTCAGCGTTTCGGGGAGATCCGCATGTGTGAGATATATGGCTCTACTGAGGGAAACCTGTGCTTCATGAACCATATTGGCAAAATTGGAGCGGTTGGACGTTCCAATTTCTTTTACAAGctGATTTTTAAGTATGACCTGGTGAAGTATGACCTGCTTAGAGATGAACCTGTGAGAGACCATAATGGATTCTGCCAACGTGTTCAAAAAGGTGAGACGGGACTGCTGTTGTCTAAAATCTGCAGCCAGAGTCCATTTTTTGGTTATGCGGGAAGCAAACAGCTGACTGAGAAGAAGATTCTGCGAGATGTGTTTGTCAAAGGAGATGCTTACTTCAACACTGGTGACCTGATGGCTGAGGATGAGAACAACTTCATCAGCTTCAAAGACAGAGTGGGGGACACTTTCAGATGGAAGGGTGAAAATGTGGCGACCACTGAGGTGACAGAGATCTTAGGACTGGTAGATTTCATTCAGGAAGCCAGTGTGTATGGAGTTCAGGTGCCAGGAAATGAGGGTCGTGCTGGAATGGCTGCAGTGATTGTGAGACCTGAGTGCACATTCGATGGGAAGAAGCTCTTCGATCTTGTTGTCAGAGAATTGCCCTCATATGCTCGACCTCTTTTCATAAGGCTGCAGGAATCTATAGAGACGACAAGTACGTTCAAGCATCAGAAGTTTGGTTTGGTGGAGAGTGGCTTCAATCCCTCCACCATTAGCGATCCGCTCTATTTCCTGGATTACACAGAGAAGAGCTACATTCCTCTGACCAGCTCCATCTATGCTAGCATATCAAACGGTCAGAAAAAAGTCTAGCCCAAGCCTGTTTAAACCCCACGATACCTTAGAGGAACTGATTGTCACTGCACTGATACTGAGAAACACGCTGGCTCATTTGTAGCACTGTATATTTGATCAGCGTCTGCCGTGAATTATTGATCACAAATGTCTTTCAAGAGCTGCAGACCGTGTCGTTTAGTGAATATAGAATTAGTAGAAATAAAAGAGGGTAAGGATGATCTCCTCCAAGTC

Function

symbol description
slc27a6 Predicted to enable long-chain fatty acid transporter activity and long-chain fatty acid-CoA ligase activity. Predicted to act upstream of or within fatty acid transport. Predicted to be integral component of membrane. Orthologous to human SLC27A6 (solute carrier family 27 member 6).

GO:

id name namespace
GO:0015908 fatty acid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004467 long-chain fatty acid-CoA ligase activity molecular_function
GO:0031957 very long-chain fatty acid-CoA ligase activity molecular_function
GO:0005324 long-chain fatty acid transporter activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03320 PPAR signaling pathway
ko04931 Insulin resistance
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-060825-27 Predicted to enable long-chain fatty acid transporter activity and long-chain fatty acid-CoA ligase activity. Predicted to act upstream of or within fatty acid transport. Predicted to be integral component of membrane. Orthologous to human SLC27A6 (solute carrier family 27 member 6).

Ensembl:

ensembl_id ENSDARG00000046053

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003922 True 2173 mRNA 0.47 10 16501699 16540603

Neighbor

gene id symbol gene type direction distance location
XLOC_002008 NA coding upstream 105419 16374860 ~ 16396280 (+)
XLOC_002007 slc12a2 coding upstream 191520 16225117 ~ 16310179 (+)
XLOC_002006 ctxn3 coding upstream 309086 16188761 ~ 16192613 (+)
XLOC_002005 prrc1 coding upstream 313899 16165533 ~ 16187800 (+)
XLOC_002004 megf10 coding upstream 340659 16069987 ~ 16161040 (+)
XLOC_002010 isoc1 coding downstream 6656 16547259 ~ 16563953 (+)
XLOC_002011 CR790388.2 coding downstream 34475 16575078 ~ 16575175 (+)
XLOC_002012 CR790388.1 coding downstream 43779 16584382 ~ 16587854 (+)
XLOC_002013 chsy3 coding downstream 52248 16592851 ~ 16748593 (+)
XLOC_002014 CABZ01024659.1 coding downstream 215943 16756546 ~ 16757842 (+)
XLOC_002000 dre-mir-24-1 non-coding upstream 540785 15960835 ~ 15960914 (+)
XLOC_001999 dre-mir-27d non-coding upstream 546884 15954727 ~ 15954815 (+)
XLOC_001998 dre-mir-23b non-coding upstream 547040 15954579 ~ 15954659 (+)
XLOC_001997 NA non-coding upstream 548229 15937306 ~ 15953470 (+)
XLOC_002017 NA non-coding downstream 546651 17087254 ~ 17087788 (+)
XLOC_002019 BX324123.6 non-coding downstream 579314 17119917 ~ 17120049 (+)
XLOC_002020 BX324123.5 non-coding downstream 582765 17123368 ~ 17123500 (+)
XLOC_002021 BX324123.3 non-coding downstream 584737 17125340 ~ 17125466 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_00695426_00725459 SLC27A6 coding CI01000304 null 694461 ~ 725459 (+)