RNA id: TCONS_00003871


Basic Information

Item Value
RNA id TCONS_00003871
length 1485
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_001988
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15224660 ~ 15241223 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGCACCACCGGTCTCCTGGCCCATTCCCATGAAGGCTATCGGAGCTCAGAATCTGCTCACCATGCCTGGAGGAGTCAACGCATCTGGATATCTGCACAAGAAAGGAGGCAGCCAGTTCAGCCTGATGAAATGGCCTCTTCGCTTCATCATCATCCATAAAGGCTGCGTCTACTATTTCAAGAGCAGCACGTCTGCTGCACCACAAGGAACCTTTTCTCTCAACGGATACAACAGAGTCTTGCGAGCAGCAGAAGAAACAACATCAAGCAATGTTTTCCCTTTTAAGATCGTTCACTTCAGTAAGAGACACAGAACATGGTATTTCTCAGCTGCGAGTGAAGATGAGAGAAAGGAATGGATGCGGCACTTAAGAAGAGAAATCAACtattataatgataaaaaagACATCCCACTTCCAAGTGATGATTTGGATGCGGAGTCGTTATATGGACAGCTGGAGGAAACGGTGGAAATCAGGCCTGTTGAAGAAGATCCTGAAGAAGGTCGACCCACGGTTCCACCTCCATCGTATCCACCACCGCCAGTTCCGTTTCAGTCGTCTAGAGAAACCCGATCGAAAGGACCTCCGCCTCCTCTACCACCTCCATTCAAGAAACCGTCCTGCCACATCAAAGATACTCCTCCTCCACCTCTACCGTATGCCCCGCATCTGGAGAAAACAGACTCAAACAGACGCCCTGTCAGCCCCATGCCCCCTTTACCTCCTCCTGTCAGTCTTAAACCTCCGCCAGGCCCATTCTCCACAATGCCTGCCTGCGAAAAGAAGTCCAGCGTCACTTTTAatcactcaccagccactttaccCATCGTGGAGAACCTGCAGAAAGTGATGCTGATCTCTGCAAGTAAAACAAGCATTTCGGGTCATCATTTGGAAGTGAAGCCTTCATTCGGACAAAGGCCGCTTTCACCTCATCTGTCCACAAATCACAGCACTCTGGGACAGATAAACAAGCCCCCAGTGCCAAACAAACCCAAACCCGGAAGACCCTCATTCCAAAGAGCATCGCCGGATGGACAAAGTTTTCGTTCTTCTATTGAAGAGAAGCCTCCAAAACGAATTCCAGACAGAATTGATGAAAGCTCAGATGAAGAGGACTATGAAAATGTACAATTGCCTCCCTCTGTCTTTGTGAAcacgatggaaacctgtaacgTGGAAAGACTTTTTAGAGACACATACAATCAGCCGCAGAATGGACTGTACTGCATCCGAAAATCATTAACGGGGAAAACGTCACAGGTACTTGTTGTTTGGGACTCTGGAATAAACAAAGCCAGAAACTACAGGCTTTTTGAGGAGGAGCAGCGTATTTATCTGGAGACGGACGTGACGTTCACCTCTTTAGCTGCTCTGGTTGAACATTACCACAGTCACCCACTGCCCAGCAGCAACAACTCCATGCCCAATTACTCGCTCTGCTTACATTTACCATTCGGCTACACCCCGCCCAGGTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-091204-268 Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in cherubism. Orthologous to human SH3BP2 (SH3 domain binding protein 2).

Ensembl:

ensembl_id ENSDART00000137932

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005694 lncRNA upstream 128398 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 136134 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 175878 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 181912 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005841 lncRNA upstream 193220 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003891 lncRNA downstream 291093 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005695 lncRNA downstream 440942 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 561718 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 696083 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 696281 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00003870 mRNA upstream 34253 15187316 ~ 15190407 (+) True XLOC_001987
TCONS_00003869 mRNA upstream 113326 15107886 ~ 15111334 (+) False XLOC_001986
TCONS_00003868 mRNA upstream 113326 15107886 ~ 15111334 (+) True XLOC_001986
TCONS_00003867 mRNA upstream 113788 15106808 ~ 15110872 (+) False XLOC_001986
TCONS_00003866 mRNA upstream 132317 15088534 ~ 15092343 (+) True XLOC_001984
TCONS_00003872 mRNA downstream 13789 15255012 ~ 15305141 (+) False XLOC_001989
TCONS_00003874 mRNA downstream 13975 15255198 ~ 15305144 (+) False XLOC_001989
TCONS_00003877 mRNA downstream 14083 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003876 mRNA downstream 14083 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003875 mRNA downstream 14083 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003854 other upstream 1292942 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1329804 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2891291 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 3450141 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 3725851 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003873 other downstream 13959 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 57567 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 361861 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 713356 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 713504 15954727 ~ 15954815 (+) True XLOC_001999

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04318151_04331824.mRNA True 1838 mRNA 0.48 13 CI01000304 4318151 ~ 4331892 (+)