RNA id: TCONS_00003829


Basic Information

Item Value
RNA id TCONS_00003829
length 3003
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_001953
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11038192 ~ 11094127 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTCTCAGtcatctgaatgtgtgtgtgtgtgtgtgtactagagagagagagagagaaagagagagagagattagcTCTTCTTCCTCCAGCATTAGGGCCGAACAGTGAGGTGTCAGCGAGCGCATCCGGACACAGGACAGCAGAAGCAGCTATGGCCCTGCTCGATCTCGCCCTGCAAGGCTTCGCCATCTTCGGCTTCCTCTTATTCCTCGTCCTCTGGCTCATGCACCTCGTGTCCATCATCTACGTCCGTCTGCATCTCAACAAGAAGACCCCAGACAAGGTGCCATACAGCAAACTAGCTGGTGTTTCGCTGCTGAAGCCACTCAAGGGTGTGGACCccaatctaataaacaatctcgAGACATTTTTTGAACTGGACTATCCCAAGTATGAAATCCTGCTCTGTGTTCAAGACCACGACGATCCAGCCATCGATGTATGTAAAAAGCTGCTGGGCAAATATCCCAATGTCGATGCCAGGTTATTTATAGGTGGTAAGAAAGTTGGCATCAacccaaaaataaataacctCATGCCAGCTTATGAAGGGGCAAGGTACGAGCTCGTCTGGATCTGTGACAGTGGCATTCGAGTGAAGCCAGACACTCTTACTGATATGGCTAATCAGATGACGGAGAAGGTGGGACTGGTTCATGGTCTTCCATACGTGGCAGACAGACAAGGATTTGCCGCTACATTGGAGCAGGTTTATTTTGGAACGTCACATCCTCGTTCCTACATCTCCGCCAATGTAACAGGAATCAAGTGCGTCACGGGGATGTCGTGTCTCATGAGGAAGGACATCCTGGACCAAGCCGGCGGCCTGATTGCTTTTGCTCAGTACATCGCTGAAGATTACTTCATGGCCAAGGCCATCGCAGACAGAGGATGGAAATTTTCCATGGCGACACAGGTAGCCATGCAGAATTCAGGCTCATACTCCATCGCACAATTCCAGTCTCGCATGATCAGATGGGCCAAGCTGAGAATCAACATGCTGCCAGGCACCATCATCGAGCCCATCTCGGAGTGCTTTGTGGCGAGTCTTATCATCGGCTGGGCCGCTCATCATGTGTTCCGCTGGGACATCATGGTGTTTTtcctgtgccactgcctcgcctggtTCATTTCAGATTATATCCAGCTCAGAGGAGTACAGGGCGGCCCTCCATCCTTCTCCAAGCTGGACTACGCAGTGGCCTGGTTCATCAGGGAGTCCATGACTATTCAGATTTTCCTGTCTGCTCTTTGGGATCCCACCATTAGCTGGAGGGCCGGACGTTACCGCTTGCGTTGCGGAGGTACAGCAGAGGAAATCCTGGATGTTTAAACGGCACCGTGTGCCAAGGACTATGCACTGCAAGACCACAAGGTCGCAGATGGACAAATGAACTGCaaacatttattgtttgttttgggttttaTTCCAACTTATAGTTTTTAACCTGTGACTTTAGCTCAATAGATTATTTATGTCCTTGgtgcttttttttctatttgttttccTGTGAGGTCTCTTGATGATTTGAGACCTTGTTCTAGATGAGCCAAAATTAATGAAGGGGCAAAGAAGAGAGAACTTTTGAGGATGAGGCGGCACTTCAGTGGTCATCAAAACCCTGATGAAAAATatcaacttttttcttttctttttttcttttttttttataggtcCTTGTAACATGTGTAGTGGTGATTGAATATGTGTCCAACACATCCATTTTATCATACGTTTGGATGAATGGTACAGTTTTTAAATGATATAGTGGGGTGTAGAAGTCACTTGCGTATGAATGGATCACATGCCTATCACAGTGTTGCTCTGAACATACAGCACTCTTgccatattttatacatttttggacCTCTGAATGCTCAAAAACGGATCCCCTCAGGTCCATTTTATGTTTACCGGACAGCAATATCTTCTGAGGTGATGCATAGGGAATTTTGGCAGAGCTTTGTATATGGATACTGTGGATCTATCCAGAAAACGACGCAACACTTGTATATGCTTGCACAGTTTTTGCAGCCACCCTGCAGTATTCAAGGCCTAGGTTAAACCTCGTTGTGATACCTGCAGATTTAATCTCATATCTTATGAAATGTAGTGCCATTTGAGGAGTGAACGTTTTTATTGTTATAGTTTTGCTTTTCTCCAAGGCCTTCGTCATCTCCcctgcttcattcattcattcattcattctctgcaCTGGTTGCTTTTGTACCAGGTTCAGGGTCTGCTTAAACATTTCCTCCATGCTGCTGCTTGTTTAAGAAGCTCTGTCAGTATTTTCCTGCAAAAGTTTGACTGGATATATATAAATGCTTACCTCCAAATTGTCCAAACATTTCATCCGACACCATTTCAGAACCAATTTCTGCTTGTCATGAAGAGTTTGTGAAGTTTTCTTTATATACACTCAGTTTTTTTGAGTTAAAGCACAAAATGATTTTAGAAAGTGCTATGTTTACGCTCTGAAACATTTCAGACCTCACAGTCACACCATGTGCTTTTTGGCTTCTCAATTTCCCCATTTACATAATCCAACTTTGCCATCAGTCAAACAGTATTCACGAAACAATTGACATTCTTCTCTGTattccttttttttgttgttgatgttcGAGGAACTGCTAGTTTCTGTTTTCTACTGCCAGCACTTGTCGTTAAACCGCTTCTTCTGCATTTTCCTCATTTTTTTGAGTCTCTCTTGCCCGCCTTCTTGAGCTGATCATTAAGTACCCGTGTCAGCACTGGCAGTATTGTTTTTACACAATTCACTTGGGTAGTTCAACTCTtattcaaaaacaaacacaagtgaAGTACAGTACGTATGTCTTTATAGTCCCAACAGCTGCCATTTATGAAGTACACTGTTTTAACCCAATGCCAAACCCTccattgttaatgtttttttggtGTTGATTTCTTCTAATTTGAACACATCTGACTTTTGGGCTCACTATTGGAAATAAACTTGTGTTTTGTGCATGA

Function

GO:

id name namespace
GO:0006679 glucosylceramide biosynthetic process biological_process
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008120 ceramide glucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-030131-9885 Enables ceramide glucosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in notochord; primary neurons; trigeminal placode; and yolk syncytial layer. Orthologous to human UGCG (UDP-glucose ceramide glucosyltransferase).

Ensembl:

ensembl_id ENSDART00000047954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003828 lncRNA upstream 50890 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 214744 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 214744 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 220562 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00003816 lncRNA upstream 300942 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00005834 lncRNA downstream 166027 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00005688 lncRNA downstream 419259 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 558467 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 558622 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 831946 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00003826 mRNA upstream 39693 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003823 mRNA upstream 213906 10801719 ~ 10824286 (+) False XLOC_001951
TCONS_00003820 mRNA upstream 214320 10801564 ~ 10823872 (+) False XLOC_001951
TCONS_00003819 mRNA upstream 241256 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003818 mRNA upstream 242016 10788811 ~ 10796176 (+) False XLOC_001950
TCONS_00003831 mRNA downstream 166043 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA downstream 167449 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003833 mRNA downstream 171260 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003834 mRNA downstream 188756 11282883 ~ 11312342 (+) False XLOC_001955
TCONS_00003835 mRNA downstream 192614 11286741 ~ 11312342 (+) False XLOC_001955
TCONS_00003827 other upstream 50890 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 214744 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 234836 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1125015 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 1312301 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003830 other downstream 21727 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 404566 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 680278 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1239126 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2762665 13856792 ~ 13894856 (+) True XLOC_001972

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_05039292_05067803.mRNA True 2057 mRNA 0.46 14 CI01000304 5038986 ~ 5067814 (-)