nit2 (nit2)


Basic Information

Item Value
gene id nit2
gene name nit2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 602103 ~ 617595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602630.2
ctttgtggctgtggtaactagtgacaaacGTTCCACAGAAAGACGGGCGCAATCGGTCGGAGCCACTGAGGTATAATAAGAACCGTCGTGCTAATGACATACAATTAATAATAGTGGTATCTGCTGGTCGGTTGGGCTTACCAGCTACATATGCGCATAAACTGAACTAAAACAAAATACCTTTATTTTGAAAAGATGTCCAGCATAGACCCGGAAGAAGAGATGTTTTTCACGTTCATATTATGAGAACACGAATCCTGCAAACTGCTGCAAGCATTAATGTCTCTATTGGCCAAGACAATGTCTAAGTTCCGTCTAGCAGTGGTCCAGCTACATGTGACAAAGGTCAAAGCTGACAACCTCTCCAGAGCCCGGGGGCTGATCAAAGAAGCAGCTGCACGGGGGGCCAAATTGGTGGTCTTACCTGAGTGCTTCAACTCCCCCTATGGAACTGGCTTCTTCCCTGAGTATGCAGAGAAGATCCCAGGAGAATCCAGTCAGGTTCTGTCTGAGGCAGCCAAGGAGAGCCAGGTGTATCTGGTGGGAGGCTCCATCCCTgaggaggatgatggagggaagCTGTATAACACCTGTCCAGTGTTTGGACCTGATGGCAGCCTGGTGCTCAAACACAGGAAGATCCACCTCTTTGACATCGACGTTCCAGGGAAGATCCGTTTCCAGGAGTCAGAGACACTGAGCCCAGGGAGCAACCTGTCAGTGTTTGACACGCCATACTGTAGGGTGGGTGTAGGGATCTGCTATGACATAAGGTTTGCAGAGCTGGCCCAACTCTACTCTAAGAAAGGATGCCAGCTGTTGGTCTACCCTGGAGCCTTCAACATGACCACCGGGCCAGCCCACTGGGAACTGCTGCAGAGAGGAAGAGCGGTTGATAACCAGGTGTACGTGGCCACGGCTTCCCCTGCCAGAGATGAGACAGCCTCCTACGTGGCCTGGGGTCACAGCACTGTTGTTAGTCCCTGGGGAGAGGTGATATCTAAGGCGGGGTCTGAAGAGACTGTTGTTTACGCAGACATTGACCTGCAGTATTTGGCCAACGTTCGTCAACAGATCCCCATCACAGCCCAACGCCGCAGTGATCTCTACACTGTGAACGCAGTGCAGGAGGGATGACCTTTAACCCCTGAACCCTTAGCTATGAGAAACTGAGGCAATCAGGAGTTACAGTAAACAGACCTGTCTATTCTTGGTGAGAAATTGATAGCTGGAGAATGAGTGTTGGCTACACAGCTGTTTGTGCCTACAATACATGACTCCACTGTGACCTACAGTGGAGTAACAGTAGCAGCTGTGGAACCAGTAAATGTAGTCTGATTTTGAAGGTGCATGTAATAAAGCAGAATATCTTCGATGGAACCATTTTACACAAAGAGGATGTATGTCCTCTCTAATTTACACAAAGAGGATGAATGTCATCTCTAATTTAAACAAAGATTTATATTCTTAGTATAACATGTCTCATCTGTTTTCAAATCTACATCCAGTTCAATTAAATTCATTTTTTCCAAGAAATACT

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
omega-amidase NIT2

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602630.2 True 1540 mRNA 0.48 10 602103 617595

Neighbor

gene id symbol gene type direction distance location
tbc1d23 tbc1d23 coding upstream 104975 439965 ~ 497128 (+)
LOC110532027 tomm70 coding upstream 180870 384207 ~ 421233 (+)
slc9a7 slc9a7 coding downstream 164245 781840 ~ 1244153 (+)
tubgcp5 tubgcp5 coding downstream 471801 1089396 ~ 1133908 (+)
cyfip1 LOC106590724 coding downstream 556116 1173711 ~ 1300624 (+)
LOC118964682 NA coding downstream 709727 1327322 ~ 1328266 (+)
gabrb3 LOC107673538 coding downstream 716502 1334097 ~ 1398380 (+)
G420 NA non-coding upstream 44509 557387 ~ 557594 (+)
G399 NA non-coding upstream 127522 474223 ~ 474581 (+)
G391 NA non-coding upstream 135575 464887 ~ 466528 (+)
G396 NA non-coding upstream 138085 463502 ~ 464018 (+)
G376 NA non-coding upstream 166308 435513 ~ 435795 (+)
G456 LOC106574112 non-coding downstream 14371 631966 ~ 633986 (+)
G464 NA non-coding downstream 32143 649738 ~ 655342 (+)
G465 NA non-coding downstream 33484 651079 ~ 653450 (+)
G389 NA non-coding downstream 43941 661536 ~ 662909 (+)
G467 NA non-coding downstream 48580 666175 ~ 671266 (+)
G166 NA other upstream 282129 318047 ~ 319974 (+)
G51 NA other upstream 471840 120466 ~ 130263 (+)
G50 NA other upstream 481796 112959 ~ 120307 (+)
G26 NA other upstream 508385 56555 ~ 93718 (+)
G19 NA other upstream 529804 52711 ~ 72299 (+)
G583 NA other downstream 386188 1003783 ~ 1010207 (+)
G961 NA other downstream 1461303 2078898 ~ 2079603 (+)
G998 LOC106576565 other downstream 1641288 2258883 ~ 2305334 (+)
G2016 NA other downstream 2026740 2644335 ~ 2645169 (+)
G2343 NA other downstream 2597102 3214697 ~ 3216234 (+)

Expression


Co-expression Network