LOC110529807 (pfn2)


Basic Information

Item Value
gene id LOC110529807
gene name pfn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8486654 ~ 8494344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987202.1
GCGGAGTGATTTATTTAAGGACTACACCCAAGCGCAACCCGTTGGCTGTGTGGCTTCTCTTCTTCTGTCCAAACCCAGAAGACAGCCGGGACGAGACGGAGCCGGGGAATTGTTGGAGACTTCAAAATCACCGAAAGAAAATACAGCTTATAGAACCGGCACTGTTGCTCTAGAGTACCTGtcacatatatatatttaaaaaaaaatctatatatatttccacatttGAACTAATACGCAAGTATGTCCTGGCAAGGCTACGTGGATAACCTGATGGCCGATGGCAGCTGCCAGGACTCCGCCATTGTTGGTTACACGGACTCCAAATATGTCTGGGCATCGTTTCCCGGTGGTACATTTGTTAACATAACGGTTGAAGAAATCGACATCATCGTAGGAAAGGACCGAGAAGCCTTCTTCTGCGGTGGGCTGACCCTAGGCCAAAAGAAATGCTCCGTCATCAGAGACAGCCTCCACGCCGACGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCCACATATAACGTTTCCATAGGCAAAGCCGGCAAAGCGTTGGTTTTAGTCATGGGAAAGGAAGGTGTCCATGGAGGACAGCTCAACAAGAAAGCGTATACAATGGCCGAGTACCTGAGGAAGTCTGGATACTAAAGGAGCATCGGCCCAGCCACCTAGCAGCTCACCCATAACACACACTTCCAGTTCTAGTTGGTAGTTGCTTACTTTTCTCCCCAGACCCTCCTTTTGTCgtccccccccctttttttggggtggggggggtttgATTCCCCTTTTCTCTTGTTCTTTCCCAGTCATCTTGATGCATTCACACTGTGTACTCAATCCCATTCTAGCACTGTTGCAccatagttaaaaaaaaaaaaaaatgagcaTGTTGTTAACAGGACATTGTGACAAATCTatacttgttaaaaaaaaaaaccgTAAAAAAAAACACCCTTGCACCATTCTGGCCAATgctcagtggggggggggggggggacgaatAAAGTGAAGGAAACCTAAAATTGATGAACTGAGATTTCGTGTGATGGTGCCCCGGAAGTTCTCTTGAGCAGCCGATGCCTTTGGAGCACTTGAGCTGTAACCAAGCTCATTGTCTTCCTTTTCTAGagcatgtttattttttttggggggggcgcaTGCATATCTTTGAGGCTACTGAAATACTGTTgttccctctgtcccctccctgtaACTCCTGCCAAATATCTGTAgctccttccccctcttcctgTTTGTCCATAGGTGACACTACATCAGTACACGGGAGGAACACTCCATTAACCAATCACTACACCCTAAAgtcccctgtatctccctctctgagCCACACTACTCTACCGGATTGGGGGGGGGTTGTGCTTCAATGCAGTCATGGCAGGCTTATCAGTTCTGGTATTGATTGAGTCAGAAGGCAAAACCGACATGGTGGATGCAGGCAGAATCTCTTCCATGTCCTCTTCATGACTACATGAACCCCATTATGGACATTCCATCGTTACAATGGCGTAGACACTTAAAACTGTTTGCCAGCTCCTGTAATGCATTtcctttatttgttttattttttaaaggctGCCATTTTGGACAGTAGATACATCCAGTTTGACATTTTCATAGGACCAATTTTAGTGACAGCTTTGGGTAAATATACAATTGCTCTAAATCATTGAAGGATGCCTTCTATCCTCATCTTTCCCGCTGAAGGCAAAACAACACTAATGTAAAACCACATCTTTCTGTTGAAGGCACAAGGGAGGGAGGGTTTGCGGTGGATGAAATCGAGCGGTCATAATTTGACAACTTCAGATTTTTTATTAAAGAAATGAATTACTGCATTTCTAAACCCATGCTGTGTGAAGAAACGACTGTGGAATAAATGGCCTTGTACTCGTGTTCAACTAAGATATGGTATCAAACTTTCTTTTCAAGCTCTGTACTTAAATGTAATGTCCAATTTGAAaagaactttaaaaaaaaaaataaaaaaaaagaatatatatataaagtagaAATTACACAATTGAAATGGGAGACGGGATTGGTTGGAATAAAAACTCTTTTGATTGTCTTGTGGAAACTTGTATACCAAAGCTGTGTATCCTGTACCATAATGTTGAAACATCAATTTCTATTGTATGATGGATTTTTAACAGCTGCCCAGGAAGGAGTCATTTCAttggcacttttttttttttttttttgcatcagTGCCAATGTTCAGGccttgtggggtgtgtgtgtgtgtgtgtactaattAAAACCTTCATTTGCTGACTTTCCTGACACTTCTTTTCTTACACTTGGGATAGTCTCTTTAACACTTCATATGCCTAAACCAAGAAATGCCATAAATTAATTTATCAccttgtttacagacagatcaaataaataaattccaACCAGA

Function

symbol description
pfn2 Enables ATP hydrolysis activity; actin monomer binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including negative regulation of ruffle assembly; positive regulation of ATPase activity; and regulation of actin filament organization. Located in extracellular exosome.

NR:

description
profilin-2-like

GO: NA

KEGG:

id description
K05759 PFN; profilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987202.1 True 2443 mRNA 0.43 3 8486654 8494344

Neighbor

gene id symbol gene type direction distance location
LOC110505168 LOC106574179 coding upstream 214922 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 coding upstream 255088 8229189 ~ 8231566 (+)
LOC118943893 LOC106574176 coding upstream 261387 8224365 ~ 8225267 (+)
LOC110497697 LOC106574176 coding upstream 272767 8209333 ~ 8213887 (+)
LOC110529566 LOC106574176 coding upstream 286988 8192682 ~ 8199666 (+)
LOC110515166 ankub1 coding downstream 108381 8602725 ~ 8612667 (+)
LOC110532690 NA coding downstream 130542 8624886 ~ 8634174 (+)
LOC110519734 ankub1 coding downstream 172825 8667169 ~ 8693760 (+)
LOC118936489 ankub1 coding downstream 227226 8721570 ~ 8747704 (+)
LOC110510915 ankub1 coding downstream 270645 8764989 ~ 8771138 (+)
G7092 NA non-coding upstream 11086 8475364 ~ 8475568 (+)
G7091 NA non-coding upstream 11573 8474845 ~ 8475081 (+)
G7089 NA non-coding upstream 17533 8468705 ~ 8469121 (+)
G7085 NA non-coding upstream 39663 8446355 ~ 8446991 (+)
G7081 NA non-coding upstream 42613 8443832 ~ 8444041 (+)
G7047 NA non-coding downstream 1391 8495735 ~ 8495841 (+)
G7383 NA non-coding downstream 112404 8606748 ~ 8606971 (+)
G7387 NA non-coding downstream 116158 8610502 ~ 8610850 (+)
G7396 NA non-coding downstream 126226 8620570 ~ 8620924 (+)
G6807 NA other upstream 449500 8036617 ~ 8037154 (+)
G6518 NA other upstream 600747 7885391 ~ 7885907 (+)
G6434 NA other upstream 761045 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 964604 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1489431 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1646900 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2982320 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4744269 13238613 ~ 13295452 (+)

Expression


Co-expression Network