LOC110519734 (ankub1)


Basic Information

Item Value
gene id LOC110519734
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8667169 ~ 8693760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988195.1
aATCATTCAGAATAGCCTAATACGTCATGAGAAGCCCTATAATTTAGCTACAGAGGACCAATAGCTTCTTTTTTAAATAGCCTAGCTGCggattgtagcccaataacaaagaatagcctacagtcgggaacgcgaggcaaatctgtcagtgaaaaaacagcaggcagacaaaacaggccttttgcaatatttcaaatacaatcgagGGAAAACAGGTTGGAAAGCAATGACTCTTGCTGAAAAGATAAGACTATGCTGTAgactaccaaaatatttgatcaaaacccaaacattgttttacaaaacagagagagggagagataggcttTTGACACGAGCGCATCGACAATCTCCAGCGagtgagctgcgcatcattggTGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGGGGCTATTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACTTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTTGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTTTTTCGCCATCAGCGTTCTGACCCTTGCCTGTCGGGGAAGTGTGTGCGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGTATCAGGGTGATGTCCAAAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCCCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAATTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCCCCACTGCGACCGCACATCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGTTAGTCCAAGTTTAAATGACAGCTACGGTGAATATGAATATTTCTCTGGAGGTTTCTTATGAAAGGTGTGAATACTGTCAGAAGAAGCCTCCTATAAtcagtggtggggggggggacacatgTAAAAGCTGTTTacacactttttattttattttgttcaaGCATTTACCCACCTTTTGTGGAAGATGCATTGAAAGTAGAGGGAGCGTTACTTCTTTAATCCTGAACGGCAATCAGCATTTACCAGTCAAtgtttttaccactacatcactgcctATGATATACCCTTATCCTCCCTGAATAGATTTCAGTACAAACAAATCATGAGCCAACCATCATGCTTAGAAGGTatatagtcaaatcaaatcaaatcaaactttatttgtcacatgcgctgaatacaacacgtGTAGTTCTTTCTGTGAAAtactttacttacaagcccttaacaaacagtgcagttcaagaagagttgaaGAGAATATTTACccaataaactaaagtaacaaataataaaaCAGTTGAACTTGTCCagaggccatttgattaattgttcagcagtcttatgacttggggttagaagctgttataGGTTTACCCTAACAAGTCCTGAAACaaatcatggggcggcagggttagagcgttggactagtaaccggaaggttgcaagttcaaatcccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaataaaaataaattaaaaaatgaGCCAACTATCATGCTTAGAAGGTATATAGTGTCAGTCTTATTGGTTCACCCTAACAAGTTGTTTCAGTatggggagaggatagaatgTAAGGGCACTTCATTAATGTATTGAGGccattacatatacagtatttcacaATGCTAGGACACAGATTTGGTCTCCTAACCTTGTTCTGGTTGATTGACTCTCTAACAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGGAATTGTCCAAAAAGGAACTCTTATCTAATTTTTTTTACAGTGAACAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACGACTTAGAATTTCGTTCCTTTGGATGAGGCTTATAGATATAGTCAGTACTGTGTTTGATTTGTGTGCAGAAAGTTTACAACGGCAGGCAGTGGATTCTCAGTCATTCCTATTCTCAAGTAACAAAAACGCATCATATTTCACTGGCTATTTGTAGTAGCCAAATGTGAATGGAATTATAATTATTCTAGAATCATTCAGTTGACTGAATGTGACTGTGGTTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGATAGTAAGTGTTTGACATGGGTCTAATTGAGGCTCCAACCCCCTGCCTTAAAACTCTTTTATTAAGATGTGGATCATTATTGCTCATATGAGTCTGTGCAGTGTCAAAATAATACATACTGTATTTCACATAGAGTATTCGACAAACTCTTTATTTACGTTACAAAACTGACAACTACTGTGACGATGTGTTAGCACAGCATGTGTCATCATTCCCCTGCAGTGTGTGGATTTACACAGCAATATAGCAGACAGCTtaaatagtttatttttatttaacctttatttcactagacaagtcagttaagaacaaattcttatttacaatgatggccaaactcggacgacgctgggccaattatgcggcaccctatgggactcccaatcactacCAAATCCAATATCACACACTTCTTCCTTAGTATTCTGAGAACTATGAGTGGATCGTGGACCCATGCATAAATGATAACTTTGCTGTGGGGCAAGTAGAACATCCGGGTTAGTGTATGTGCATTATCTGGAGAGTTGATTGTCTTTGTCTCGAAGCCTTTCCATTTCTGGGGTATTGAAGAAGCTTCTGATCTCAACCTTGTTGACAGGTAAGAAACACTTGGTTAGTGTATGTGTCTTATCCAATGGGTTGTCAGGTGAACGTTGAAGATGCTTCTTGGAGGTGATCTAATGATGTCATTGAATCGCTGTCATTGAGTTGCTCACTGGACAAGACAATTATTCACTGAAAATTAAatctgtctttcatttcacttatGTTGATACTTGATTGGCTATTTGCTGTcttttgaaaatacaaaaataaatataactGTTTTATGAA
>XM_036988230.1
ATCATTCAGAATAGCCTAATACGTCATGAGAAGCCCTATAATTTAGCTACAGAGGACCAATAGCTTCTTTTTTAAATAGCCTAGCTGCggattgtagcccaataacaaagaatagcctacagtcgggaacgcgaggcaaatctgtcagtgaaaaaacagcaggcagacaaaacaggccttttgcaatatttcaaatacaatcgagGGAAAACAGGTTGGAAAGCAATGACTCTTGCTGAAAAGATAAGACTATGCTGTAgactaccaaaatatttgatcaaaacccaaacattgttttacaaaacagagagagggagagataggcttTTGACACGAGCGCATCGACAATCTCCAGCGagtgagctgcgcatcattggTGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCAGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCCGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGTGTCCCCCTGAGGATCGCCCTTCAGTACAGCCACAGGGAGTGTGTGAGTCACCT

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988195.1 False 3767 mRNA 0.45 4 8667169 8674156
XM_036988230.1 True 1007 mRNA 0.55 4 8667170 8693760

Neighbor

gene id symbol gene type direction distance location
LOC110532690 NA coding upstream 32995 8624886 ~ 8634174 (+)
LOC110515166 ankub1 coding upstream 54502 8602725 ~ 8612667 (+)
LOC110529807 pfn2 coding upstream 172825 8486654 ~ 8494344 (+)
LOC110505168 LOC106574179 coding upstream 395437 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 coding upstream 435603 8229189 ~ 8231566 (+)
LOC118936489 ankub1 coding downstream 27810 8721570 ~ 8747704 (+)
LOC110510915 ankub1 coding downstream 71229 8764989 ~ 8771138 (+)
LOC118966266 ankub1 coding downstream 96471 8790231 ~ 8798967 (+)
LOC118966103 ankub1 coding downstream 105698 8799458 ~ 8851372 (+)
ndufb5 LOC106574141 coding downstream 174350 8868110 ~ 8871284 (+)
G7396 NA non-coding upstream 46245 8620570 ~ 8620924 (+)
G7387 NA non-coding upstream 56319 8610502 ~ 8610850 (+)
G7383 NA non-coding upstream 60198 8606748 ~ 8606971 (+)
G7047 NA non-coding upstream 171328 8495735 ~ 8495841 (+)
G7414 NA non-coding downstream 17754 8711514 ~ 8768048 (+)
G7417 NA non-coding downstream 29123 8722883 ~ 8723224 (+)
G7436 NA non-coding downstream 62711 8756471 ~ 8808166 (+)
G7440 NA non-coding downstream 74764 8768524 ~ 8797364 (+)
G6807 NA other upstream 630015 8036617 ~ 8037154 (+)
G6518 NA other upstream 781262 7885391 ~ 7885907 (+)
G6434 NA other upstream 941560 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 765188 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1290015 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1447484 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2782904 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4544853 13238613 ~ 13295452 (+)

Expression


Co-expression Network