LOC118966266 (ankub1)


Basic Information

Item Value
gene id LOC118966266
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8790231 ~ 8798967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989295.1
ATGCATGACGACACATTGTATCTCAGTGAAGCAGGCATGCAGAACGAGATCGCCCCACCAAGCCAGATAGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGTACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGATTGCAACCGGCTGCACGACTACGCCATTGACCTGGggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACATGTGAGGAGGTCAgaatacacatctacacactgaactGTATGATAGACTTACTATCAACAGTGATGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCAC

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989295.1 True 738 mRNA 0.59 5 8790231 8798967

Neighbor

gene id symbol gene type direction distance location
LOC110510915 ankub1 coding upstream 19093 8764989 ~ 8771138 (+)
LOC118936489 ankub1 coding upstream 42527 8721570 ~ 8747704 (+)
LOC110519734 ankub1 coding upstream 96471 8667169 ~ 8693760 (+)
LOC110532690 NA coding upstream 156057 8624886 ~ 8634174 (+)
LOC110515166 ankub1 coding upstream 177564 8602725 ~ 8612667 (+)
LOC118966103 ankub1 coding downstream 491 8799458 ~ 8851372 (+)
ndufb5 LOC106574141 coding downstream 69143 8868110 ~ 8871284 (+)
usp13 LOC106574137 coding downstream 78624 8877591 ~ 8915400 (+)
LOC110531220 NA coding downstream 373001 9171968 ~ 9183082 (+)
LOC110531147 cssa16h2orf72 coding downstream 419691 9218658 ~ 9221408 (+)
G7414 NA non-coding upstream 22183 8711514 ~ 8768048 (+)
G7417 NA non-coding upstream 67007 8722883 ~ 8723224 (+)
G7397 NA non-coding upstream 114216 8620933 ~ 8676015 (+)
G7396 NA non-coding upstream 169307 8620570 ~ 8620924 (+)
G7573 NA non-coding downstream 65214 8864181 ~ 8865177 (+)
G7581 NA non-coding downstream 75814 8874781 ~ 8877527 (+)
G7740 NA non-coding downstream 331637 9130604 ~ 9130845 (+)
G7757 NA non-coding downstream 354571 9153538 ~ 9153843 (+)
LOC110505168 LOC106574179 other upstream 534353 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 559996 8229189 ~ 8231566 (+)
G6807 NA other upstream 753077 8036617 ~ 8037154 (+)
G6518 NA other upstream 904324 7885391 ~ 7885907 (+)
G6434 NA other upstream 1064622 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 659981 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1184808 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1342277 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2677697 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4439646 13238613 ~ 13295452 (+)

Expression


Co-expression Network