LOC110531220


Basic Information

Item Value
gene id LOC110531220
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9171968 ~ 9183082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614466.2
ATACGACACAGACCTGCAAAAAAAATTAAACAGACACTGAAATAAATACGTTTGTTTGTGTTGCTAACGAACCCTTCTCTACTGCCCACATTCACAATGCTTTATTTGATTCTCTTTGTTGGAACGTTCGTCCTGTCCTCGGGGCAATTCACGACTAGCCCATCGTTTACAACATCAACCACAAGTTCCATAACCTTAACTGCTAACCCGTTGTTGGCACCGTCAACCACAACACCTACAACCACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTACCCCTGGGGATACAACTACTGCCCCATGGGATACAACTACTGCCCCTGAGGAAATAACAACCACAACTGTTATCGCGGATTTTACAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCCGTTCAACCAACAACAATTCCTACAGCAAACCTGACCACGTTTGCACATGCAATGGTGAATTTATCCAGCTACGAAAATCTGGATAGCGATGCAATCGTTTCAAACATTGAGGAGTTCTTGAAGCACATCAGCAATAATGCCCTTGGACCTCTGAAGATAACAGTGAACCGTTTCACAAAATGTAGCGGCGCCCAGTGTGGAGACCAGCAACCCTCTACTACCCCTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCTCTACTACCCCTCAATTCTTCCCTGACACTCAAACCTCCACTGGCCCTCAACCCACATTTACATAGATACCGTTCTGGTTTCATAATCACCACTGATTCATCAGACATCTGTATAGCCTACTTGTTGATTTGTTAACTTGTCAATAATTTGAAATGGAGTGGGGTAAATTGAAATGTAGGTACATAAATATATGTCATACAAGTTCATACTCTAACTTTGAAGGAATAGCTATGGTTTTTAAAAGTCAGTGATATTGGTAACACTTTCCATTGAGGTATCCTTTAAGTGAGTTGTAAAAAGGTATATGAATACTTCAACATCAACCGTACTGACTGGGATTAGGATATGTATTTTACTGTATGACAGGGACTGGTAGATATTGCAATCAACAAGTTTAAATCAATCATGTGGAAATATCTCCATTGACCCTGAACTTGGATGTAGTAATTCAAAGACTTTGGCTTTGTGAAGATTGAAACTGCTTTTTCTATAAAGTATGGCAGACTATTTAgaaatatgttgtttttttttagctAAATATTTTGTAGCTTTTTTATTCTGTTATTTTCATTACTTTTTAAGAtgtattctttgttttcctttGTCAGGTTGGGCCCCTCTCAATCAAACCTGTTCTCAGCCCCATTGTTATTTATtgaagctttatttaactaggcaagtcagttaagcacaaattcttatttacaatgacagcctacccctgccaaatccggacgacactgggccaattgtgcgcagccctatgggactcccaatcccagaCGAATGGGATACAGGCCTGGAATCAAATCAGggtctgcagtgacacctcttgcattgagctgtagtgccttagactgctgcgccactcgggagcccaattgTGGTATGTTAGGTTGTGATCCTCTCAATCAAACCTGTTTTTCAACCCCATTGTGGTATGTTAGATTGGGTCCCTCTCAATCAAACCTGTTTCTAggttcagacaaaacaactttcTTCTTGTGCTCATTTGGAATCATTGATAAAAAATAACATGCCAAATCATCTCTTATGTTGATTATATTGCTAACTGACTTGATTTAAAATTACTTTCAGATGATGTGGGCATGACATGCTGTGTGGTTGATTGacttttttttaatgcatttgttGGCAGTGGCTAGTTTAAAGGGGGCCTGAACATACTGATTTCACCTCGGTCTTCCTCCTCATTAAGTAAAATGCATTTTCATTTTgcgggtgtggtttgatgtgggtgtgttatgttcactatataaaataatataaaaaa
>XM_036989375.1
ATACGACACAGACCTGCAAAAAAAATTAAACAGACACTGAAATAAATACGTTTGTTTGTGTTGCTAACGAACCCTTCTCTACTGCCCACATTCACAATGCTTTATTTGATTCTCTTTGTTGGAACGTTCGTCCTGTCCTCGGGGCAATTCACGACTAGCCCATCGTTTACAACATCAACCACAAGTTCCATAACCTTAACTGCTAACCCGTTGTTGGCACCGTCAACCACAACACCTACAACCACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTACCCCTGGGGATACAACTACTGCCCCATGGGATACAACTACTGCCCCTGAGGAAATAACAACCACAACTGTTATCGCGGATTTTACAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCCGTTCAACCAACAACAATTCCTACAGCAAACCTGACCACGTTTGCACATGCAATGGTGAATTTATCCAGCTACGAAAATCTGGATAGCGATGCAATCGTTTCAAACATTGAGGAGTTCTTGAAGCACATCAGCAATAATGCCCTTGGACCTCTGAAGATAACAGTGAACCGTTTCACAAAATGTAGCGGCGCCCAGTGTGGAGACCAGCAACCCTCTACTACCCCTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCTCTACTACCCCTCAATTCTTCCCTGACACTCAAACCTCCACTGGCCCTCAACCCACATTTACATAGATACCGTTCTGGTTTCATAATCACCACTGATTCATCAGACATCTGTATAGCCTACTTGTTGATTTGTTAACTTGTCAATAATTTGAAATGGAGTGGGGTAAATTGAAATGTAGGTACATAAATATATGTCATACAAGTTCATACTCTAACTTTGAAGGAATAGCTATGGTTTTTAAAAGTCAGTGATATTGGTAACACTTTCCATTGAGGTATCCTTTAAGTGAGTTGTAAAAAGGTATATGAATACTTCAACATCAACCGTACTGACTGGGATTAGGATATGTATTTTACTGTATGACAGGGACTGGTAGATATTGCAATCAACAAGTTTAAATCAATCATGTGGAAATATCTCCATTGACCCTGAACTTGGATGTAGTAATTCAAAGACTTTGGCTTTGTGAAGATTGAAACTGCTTTTTCTATAAAGTATGGCAGACTATTTAgaaatatgttgtttttttttagctAAATATTTTGTAGCTTTTTTATTCTGTTATTTTCATTACTTTTTAAGAtgtattctttgttttcctttGTCAGGTTGGGCCCCTCTCAATCAAACCTGTTCTCAGCCCCATTGTTATTTATtgaagctttatttaactaggcaagtcagttaagcacaaattcttatttacaatgacagcctacccctgccaaatccggacgacactgggccaattgtgcgcagccctatgggactcccaatcccagaCGAATGGGATACAGGCCTGGAATCAAATCAGggtctgcagtgacacctcttgcattgagctgtagtgccttagactgctgcgccactcgggagcccaattgTGGTATGTTAGGTTGTGATCCTCTCAATCAAACCTGTTTTTCAACCCCATTGTGGTATGTTAGATTGGGTCCCTCTCAATCAAACCTGTTTCTAggttcagacaaaacaactttcTTCTTGTGCTCATTTGGAATCATTGATAAAAAATAACATGCCAAATCATCTCTTATGTTGATTATATTGCTAACTGACTTGATTTAAAATTACTTTCAGATGATGTGGGCATGACATGCTGTGTGGTTGATTGacttttttttaatgcatttgttGGCAGTGGCTAGTTTAAAGGGGGCCTGAACATACTGATTTCACCTCGGTCTTCCTCCTCATTAAGTAAAATGCATTTTCATTTTgcgggtgtggtttgatgtgggtgtgttatgttcactatataaaataatataaaaaa
>XM_036989433.1
ATACGACACAGACCTGCAAAAAAAATTAAACAGACACTGAAATAAATACGTTTGTTTGTGTTGCTAACGAACCCTTCTCTACTGCCCACATTCACAATGCTTTATTTGATTCTCTTTGTTGGAACGTTCGTCCTGTCCTCGGGGCAATTCACGACTAGCCCATCGTTTACAACATCAACCACAAGTTCCATAACCTTAACTGCTAACCCGTTGTTGGCACCGTCAACCACAACACCTACAACCACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTGCCCCTGGGGATACAACTACTACCCCTGGGGATACAACTACTGCCCCATGGGATACAACTACTGCCCCTGAGGAAATAACAACCACAACTGTTATCGCGGATTTTACAACAACACCCACAGCTGGTGTCCCAGAGGATTCAACAACACCCACAGCCGTTCAACCAACAACAATTCCTACAGCAAACCTGACCACGTTTGCACATGCAATGGTGAATTTATCCAGCTACGAAAATCTGGATAGCGATGCAATCGTTTCAAACATTGAGGAGTTCTTGAAGCACATCAGCAATAATGCCCTTGGACCTCTGAAGATAACAGTGAACCGTTTCACAAAATGTAGCGGCGCCCAGTGTGGAGACCAGCAACCCTCTACTACCCCTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCACCACTGGCCCTCAAACCTCCCCTGACACTCAACCCTCTACTACCCCTGAACTCTTCGTTGACACTCAACCCTCTACTACCCCTCAATTCTTCCCTGACACTCAAACCTCCACTGGCCCTCAACCCACATTTACATAGATACCGTTCTGGTTTCATAATCACCACTGATTCATCAGACATCTGTATAGCCTACTTGTTGATTTGTTAACTTGTCAATAATTTGAAATGGAGTGGGGTAAATTGAAATGTAGGTACATAAATATATGTCATACAAGTTCATACTCTAACTTTGAAGGAATAGCTATGGTTTTTAAAAGTCAGTGATATTGGTAACACTTTCCATTGAGGTATCCTTTAAGTGAGTTGTAAAAAGGTATATGAATACTTCAACATCAACCGTACTGACTGGGATTAGGATATGTATTTTACTGTATGACAGGGACTGGTAGATATTGCAATCAACAAGTTTAAATCAATCATGTGGAAATATCTCCATTGACCCTGAACTTGGATGTAGTAATTCAAAGACTTTGGCTTTGTGAAGATTGAAACTGCTTTTTCTATAAAGTATGGCAGACTATTTAgaaatatgttgtttttttttagctAAATATTTTGTAGCTTTTTTATTCTGTTATTTTCATTACTTTTTAAGAtgtattctttgttttcctttGTCAGGTTGGGCCCCTCTCAATCAAACCTGTTCTCAGCCCCATTGTTATTTATtgaagctttatttaactaggcaagtcagttaagcacaaattcttatttacaatgacagcctacccctgccaaatccggacgacactgggccaattgtgcgcagccctatgggactcccaatcccagaCGAATGGGATACAGGCCTGGAATCAAATCAGggtctgcagtgacacctcttgcattgagctgtagtgccttagactgctgcgccactcgggagcccaattgTGGTATGTTAGGTTGTGATCCTCTCAATCAAACCTGTTTTTCAACCCCATTGTGGTATGTTAGATTGGGTCCCTCTCAATCAAACCTGTTTCTAggttcagacaaaacaactttcTTCTTGTGCTCATTTGGAATCATTGATAAAAAATAACATGCCAAATCATCTCTTATGTTGATTATATTGCTAACTGACTTGATTTAAAATTACTTTCAGATGATGTGGGCATGACATGCTGTGTGGTTGATTGacttttttttaatgcatttgttGGCAGTGGCTAGTTTAAAGGGGGCCTGAACATACTGATTTCACCTCGGTCTTCCTCCTCATTAAGTAAAATGCATTTTCATTTTgcgggtgtggtttgatgtgggtgtgttatgttcactatataaaataatataaaaaa

Function

NR:

description
mucin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614466.2 False 2324 mRNA 0.43 4 9171968 9183082
XM_036989375.1 False 2291 mRNA 0.43 5 9171968 9183082
XM_036989433.1 True 2192 mRNA 0.42 5 9171968 9183082

Neighbor

gene id symbol gene type direction distance location
usp13 LOC106574137 coding upstream 256568 8877591 ~ 8915400 (+)
ndufb5 LOC106574141 coding upstream 300684 8868110 ~ 8871284 (+)
LOC118966103 ankub1 coding upstream 320596 8799458 ~ 8851372 (+)
LOC118966266 ankub1 coding upstream 373001 8790231 ~ 8798967 (+)
LOC110510915 ankub1 coding upstream 400830 8764989 ~ 8771138 (+)
LOC110531147 cssa16h2orf72 coding downstream 35576 9218658 ~ 9221408 (+)
psmd1 psmd1 coding downstream 57037 9240119 ~ 9300065 (+)
LOC118966743 LOC106574127 coding downstream 245435 9428517 ~ 9436879 (+)
LOC118966784 LOC106574127 coding downstream 267850 9450932 ~ 9460358 (+)
LOC118966781 LOC106574155 coding downstream 280964 9464046 ~ 9471323 (+)
G7757 NA non-coding upstream 18125 9153538 ~ 9153843 (+)
G7740 NA non-coding upstream 41123 9130604 ~ 9130845 (+)
G7581 NA non-coding upstream 294441 8874781 ~ 8877527 (+)
G7573 NA non-coding upstream 306791 8864181 ~ 8865177 (+)
G7776 NA non-coding downstream 12273 9195355 ~ 9195727 (+)
G7780 NA non-coding downstream 34137 9217219 ~ 9218494 (+)
G8000 NA non-coding downstream 48444 9231526 ~ 9231756 (+)
G8009 NA non-coding downstream 54922 9238004 ~ 9238233 (+)
G8030 NA non-coding downstream 120010 9303092 ~ 9303588 (+)
LOC110505168 LOC106574179 other upstream 916090 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 941733 8229189 ~ 8231566 (+)
G6807 NA other upstream 1134814 8036617 ~ 8037154 (+)
G6518 NA other upstream 1286061 7885391 ~ 7885907 (+)
G6434 NA other upstream 1446359 7725046 ~ 7725609 (+)
LOC110510920 LOC106574155 other downstream 800693 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 958162 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2293582 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4055531 13238613 ~ 13295452 (+)

Expression


Co-expression Network