LOC110488261 (antithrombin)


Basic Information

Item Value
gene id LOC110488261
gene name antithrombin
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15163316 ~ 15171415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949172.1
ttgccagtTGACAAATAAAGTCCACAGAAGACTACTACTACTGGAGGAGAGTTTACTAGAAAATATTAGTTtctccttttatctgtggattaaatgTTGGAGTAAAGAACACAACATTTTGTGActgaatgggtcaaaattctacaaagatccagaaaaaaaggaccttgtgcatttcagAATGAGGCTTCCCCAGTTTGTGTGGACGCTGGGGCTACTATTGCCCTTGCTGTCAACCTCCCAGGCGTTCAAAGACATCTGCAATGCCAAGCCCAAAGACGTGCCCCTGGAGCCCAGGTGCGTCTACCGCAGCCCAGAGGACGAAGCTCCGACAGGGGATGCTATCCCAGAGAAAGTCCCTGAGAACACCAATCCCCGGGTGTGGGAGCTGTCCAAGGCCAACAGTCGCTTCGCCCTGTCCCTGTTCAAGCAGCTAGCCCAGGGAAAATCCAGCGAGTCAAACATCTTCATGTCTCCTATCAGCATCTCCTCAGCCTTTGCTATGACCAAGCTGGGCGCCTGCAACAACACGCTAAAACAGATTATGAATGTGTTTGAGTTTGACACAATCAAAGAGAAGACGTCGGACCAAGTGCATTTCTTCTTCGCCAAGCTAAACTGTCGCCTGTACCGCAAGAAAGACAAGACGACAGAGCTGATCTCAGCCAACCGTCTTTTTGGAGAAAAGTCTCTGGCATTCAATGAGATTTACCAGAATATCAGTGAGCTGGTGTATGGAGCCAAACTCATGCCACTCAACTTCAAGGAGAAGCCAGAACTGTCCCGGGTGACCATCAACGATTGGATTGCAAACAAGACTGAGAACAGGATTCAGAACACCCTGCCGAAGGACTCGCTGAACTCTAACACTGTGCTGGTCCTGGTCAACACAATCTATTTCAAGGGTCAGTGGAAAAGCAAGTTTGACAAAAAGAATGTCTTCAAGGCTGACTTCTATGTGAGTAAATCCAAGACGTGCCCAGTGTCCATGATGTACCAGGAAACCAAGTTCCACTACGGCAGGTTCACGGAAGACAAGGTGCAGGTGCTGGAACTGCCGTACCGTGGAGATGACATCACCATGGTGCTGATCCTACCTCTCAAAGACACACCCCTGTCTGAGGTGGAGGAGAACCTGGACTTGAAgaagctgactggctggctgcataGCATGAGGGAAACCTCAGTGTCAGTGCATCTGCCACGCTTCCGCATTGAAGACAGCTTCAGTCTGAAGGAGAAACTGCAGGCCATGGGGCTCGAGGACCTCTTCAGCCCCAAGGACGCCAGCCTGCCAGGCATCCTTGAAGATGAGGCGAATTATCTGTACATTTCCGATGCATTCCATAAAGCATTCCTAGAGGTGAATGAGGAAGGCAGTGAGGCGGCTGCTGCCACGGCTGTAATGGCCGTCGGCCGTTCCATAAACTCAAACCGGGAGTTGTTTGTGGCCAACAAGCCCTTCCTCCTGCTCATCCGAGAGTCCACCATCAACACCATGGTGTTCACTGGCCGAGTGGCTGACCCCTGTGACCCCTGATCACACACTTCAGATGTGTCATTCCCCAATGTAAACTGTCATGCCATGCAACTACCTACTTCTGATCTCTGTATTGAGCTCAAATAAACCAAATGGGATGAACAGTG
>XM_021560454.2
ATACTTCAAAGGTTGAGCTGAGTAAATGGTCCTTTCTACAGCCCCGGTGCACTGCAGGACACTGACCCTGTCCCCTATGAGGGACTCGCCAGCTCAAATCGCAGCCGATATTTTTACGTTCCACACAGTCATTTACTTACAAGGAAATTTACCTCAGAATGAGGCTTCCCCAGTTTGTGTGGACGCTGGGGCTACTATTGCCCTTGCTGTCAACCTCCCAGGCGTTCAAAGACATCTGCAATGCCAAGCCCAAAGACGTGCCCCTGGAGCCCAGGTGCGTCTACCGCAGCCCAGAGGACGAAGCTCCGACAGGGGATGCTATCCCAGAGAAAGTCCCTGAGAACACCAATCCCCGGGTGTGGGAGCTGTCCAAGGCCAACAGTCGCTTCGCCCTGTCCCTGTTCAAGCAGCTAGCCCAGGGAAAATCCAGCGAGTCAAACATCTTCATGTCTCCTATCAGCATCTCCTCAGCCTTTGCTATGACCAAGCTGGGCGCCTGCAACAACACGCTAAAACAGATTATGAATGTGTTTGAGTTTGACACAATCAAAGAGAAGACGTCGGACCAAGTGCATTTCTTCTTCGCCAAGCTAAACTGTCGCCTGTACCGCAAGAAAGACAAGACGACAGAGCTGATCTCAGCCAACCGTCTTTTTGGAGAAAAGTCTCTGGCATTCAATGAGATTTACCAGAATATCAGTGAGCTGGTGTATGGAGCCAAACTCATGCCACTCAACTTCAAGGAGAAGCCAGAACTGTCCCGGGTGACCATCAACGATTGGATTGCAAACAAGACTGAGAACAGGATTCAGAACACCCTGCCGAAGGACTCGCTGAACTCTAACACTGTGCTGGTCCTGGTCAACACAATCTATTTCAAGGGTCAGTGGAAAAGCAAGTTTGACAAAAAGAATGTCTTCAAGGCTGACTTCTATGTGAGTAAATCCAAGACGTGCCCAGTGTCCATGATGTACCAGGAAACCAAGTTCCACTACGGCAGGTTCACGGAAGACAAGGTGCAGGTGCTGGAACTGCCGTACCGTGGAGATGACATCACCATGGTGCTGATCCTACCTCTCAAAGACACACCCCTGTCTGAGGTGGAGGAGAACCTGGACTTGAAgaagctgactggctggctgcataGCATGAGGGAAACCTCAGTGTCAGTGCATCTGCCACGCTTCCGCATTGAAGACAGCTTCAGTCTGAAGGAGAAACTGCAGGCCATGGGGCTCGAGGACCTCTTCAGCCCCAAGGACGCCAGCCTGCCAGGCATCCTTGAAGATGAGGCGAATTATCTGTACATTTCCGATGCATTCCATAAAGCATTCCTAGAGGTGAATGAGGAAGGCAGTGAGGCGGCTGCTGCCACGGCTGTAATGGCCGTCGGCCGTTCCATAAACTCAAACCGGGAGTTGTTTGTGGCCAACAAGCCCTTCCTCCTGCTCATCCGAGAGTCCACCATCAACACCATGGTGTTCACTGGCCGAGTGGCTGACCCCTGTGACCCCTGATCACACACTTCAGATGTGTCATTCCCCAATGTAAACTGTCATGCCATGCAACTACCTACTTCTGATCTCTGTATTGAGCTCAAATAAACCAAATGGGATGAACAGTGGA

Function

NR:

description
antithrombin-III-like

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:2000266 regulation of blood coagulation, intrinsic pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03911 SERPINC1, AT3; antithrombin III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949172.1 False 1647 mRNA 0.50 7 15163316 15171413
XM_021560454.2 True 1626 mRNA 0.51 7 15166178 15171415

Neighbor

gene id symbol gene type direction distance location
LOC110488062 LOC106613585 coding upstream 3844 15130526 ~ 15159472 (+)
LOC110529430 LOC106574078 coding upstream 37314 15117850 ~ 15126002 (+)
LOC110487930 LOC106574072 coding upstream 83012 15075184 ~ 15080304 (+)
elav1 elav1 coding upstream 136781 15024419 ~ 15026535 (+)
LOC110487655 LOC106574076 coding upstream 144224 15016138 ~ 15019092 (+)
LOC110529632 dph5 coding downstream 21234 15192649 ~ 15241166 (+)
LOC110489303 dbt coding downstream 253707 15425122 ~ 15432764 (+)
LOC118966767 NA coding downstream 260094 15431509 ~ 15431641 (+)
lrrc39 lrrc39 coding downstream 261674 15433089 ~ 15437025 (+)
sass6 sass6 coding downstream 276043 15447458 ~ 15468011 (+)
G13774 NA non-coding upstream 63129 15099934 ~ 15100187 (+)
G13772 NA non-coding upstream 65631 15097473 ~ 15097685 (+)
G13769 NA non-coding upstream 68140 15094962 ~ 15095176 (+)
G13768 NA non-coding upstream 68916 15094122 ~ 15094400 (+)
G13767 NA non-coding upstream 69216 15093836 ~ 15094100 (+)
G13806 NA non-coding downstream 26149 15197564 ~ 15197840 (+)
G13807 NA non-coding downstream 26717 15198132 ~ 15198454 (+)
G13820 NA non-coding downstream 54312 15225727 ~ 15225937 (+)
G13823 NA non-coding downstream 57216 15228631 ~ 15228879 (+)
G13827 NA non-coding downstream 59583 15230998 ~ 15231515 (+)
G13639 NA other upstream 201313 14961554 ~ 14962003 (+)
G13434 NA other upstream 350692 14811771 ~ 14812624 (+)
G13391 NA other upstream 462586 14700176 ~ 14700730 (+)
G13381 NA other upstream 483289 14679698 ~ 14680027 (+)
G13380 NA other upstream 483738 14679350 ~ 14679578 (+)
LOC110490510 LOC106573976 other downstream 523626 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1407671 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1745084 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1791642 16962997 ~ 16967790 (+)

Expression


Co-expression Network