LOC110492686 (LOC106573907)


Basic Information

Item Value
gene id LOC110492686
gene name LOC106573907
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16933335 ~ 16935884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567175.2
actcccatccagagcaacccacagaagcaaccagggtcaacgccctgcCCAGGAGCATGTCGACAGGTCTCCCACCAGGTCAAAACGGGGACCCAAACCAGTGACCTATTGGCCACTggcccaagctcccaaccgccAGGCCACCAACCCTCCAAGATCGCCTCACACTCCTGCCGAAAAATCATAATAATACTAAAAATACCTCTTGAATCTTGCatcgttttatatatcaactcatacaccctgtgcCATGGCATCGGTACACAAAAAATCTGTTCCcagctattttgcaatctgtatagCACAGcagtcaacatcctggtcctcaaatgaaactgggatactttcctatttatggtATTTTTATTCCTCCAACTGATTTGAtcatttatattgggcagacagaccagttcgcCACATCGTCACGCTGCCACCTGtcttttatcaaccagcacatttgagttctaccataatatttgttgtaatatttgttataTATTTTCAGGGGGATGACATTGGAATTATAACCAGCTCTGCACCACACTTCTTAGATAAAGTCAAAATAATGTTATGGGACACTTAATAGTGACTTGTTTTACTGTACAAAATGCAAAATAAATAGAATAGGGAAGAAAACAAGCACTGACCAACCCCCACGCCTCGATCCAAAGGTTTGCTATGACATCAAACCACAATGCACCGCACTGTTTGCAGTTTACCCGCCTTTTCCATGGTAATATGAATGGTACGTCCCcttattcaaataaaatactggAAAAACGTCATTTCTGTCCAATCTCCGCGCTCTGAAGTGACACAATGGAACCTACGAGGATAGAAAAGATGGAGGCAGCGCGCGAGCGCACTCATAGAAACTTCTACCTCTATAGCTGGAGGCTGGTCATCTATTGTTTCTTATTAATTGTTTCTTATTAAGGAAAAACAAAAAAAGGACATCATTAATGAAGGAAAATACGTCCAATACACTGAACGTGGACAAGGGTAGGAAAACTTTAAACgcgtatttgatttgattgtgcgcAAATTACGCATCGTTTTCTCTTCAACAACTGAGCTGTTATGGGAACCCCTCTTTCTGTTGTGAGGGTGTGCTGAATTGTTACAGCTGCTGTCATctaagaattattattatttgttttaataTGATGAAGAAGGACATGATTTTAAACCTGGCAAATTCCACACATTTAAAGCCCAATCTCCGCGACACCGAGAGCATCCTCATCTCCCCGGACCTTGGCCTGCTGAAACTGGCCTCCCCGGAGCTAGAGAGACTCATCATTCAGTCCAACGGAATGGTCACAACAACACCGACCTCTCAGTTCCTCTACCCCAAGTCGGTAACCGACGAACAGGAGTTTGCAGAGGGATTCGTCAAGGCTCTCGAGGATTTACACAAACAGAACCAGCTGAACGGCGGAACGTGCGCTCAAACGAACAGTATGGACTTAAGCACCAACGTTGCTCCTGTCACCATACACCTGGACCTACCCGTCTATACGAACTTGAACAGTTACGGCAATGGGCCTTTGGGCACCACTGTCAATTACTCCACAGACACTGTCCCCTTCCCACCACCCCCCTCTCATCATTTAGGCTCCACACAACAGCAAGCTCATTCCCGGCTGCAATCCTTGAAGGATGAGCCGCAGACAGTCCCTGACGTGCACAGCTTCGGCGACAGTCCGCCACTGTCGCCTATCAACATGGACACGCAGGAGCGCATTAAAGCCGAGAGGAAAAAGCTGCGGAATAGAATTGCTGCGTCCAAGTGTAGAAAGAGGAAACTGGAGAGGATATCCAGGCTCGAGGACAAAGTTAAGAACCTAAAAACTCAAAACACTGACCTAGCCTCAACGGCAAATGTACTCCGGGAACAAGTGGCTCAGCTAAAACAAAAGGTTTTGAATCATGTGAACAGCGGATGCCAGTTATCACCACATCAAGTTCAAGTGTACTAGTAGCAGGATGACATTTGTCAACCAGCATAAATAAGCTCATGAACCTTTTCTTGTTGGCTCTCAAATATTTCCACTATGTGCATGGAGCCAACGACGTTACAGACTGAAAGGACTTCACTAATGTacgtttttgtatactgtttacaCATTATTTCTCATTGGTGTACTTTACATAGACAGTCCCAAGACTTGACCAAACCAGCATACCGTCATTGTATTACTATATCATAGCCTTATACTGAAAGTAAAAAGTATTTGCATGTTTATTGACAAACTCGAATGTTACCTAACAGGGTTGGGCACATGCCATTTCTTATGCATTTTAACGTTTTTAAACAAGCATTTATGAACAGATTACATGTACATTTTATATTCAATGCTCCACAGTGTCTTATTTCAGTGTTTTCTTATATTAATGTGAAGCTGTCATCTTTTGTTGCACTGAATAGTTTATTTCACATTCCTATTTTTACTTGGATTCTGATATCAAATAAACTTTGCTTGATAATACAAGT
>TU18415
aatctacctgcagtgaagttgctcaacatttacattacattgtcatctaacagactcccatccagagcaacccacagaagcaaccagggtcaacgccctgcCCAGGAGCATGTCGACAGGTCTCCCACCAGGTCAAAACGGGGACCCAAACCAGTGACCTATTGGCCACTggcccaagctcccaaccgccAGGCCACCAACCCTCCAAGATCGCCTCACACTCCTGCCGAAAAATCATAATAATACTAAAAATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567175.2 False 2497 mRNA 0.43 1 16933388 16935884
TU18415 True 256 lncRNA 0.48 1 16933335 16933590

Neighbor

gene id symbol gene type direction distance location
LOC110492606 LOC106573909 coding upstream 12443 16916482 ~ 16920945 (+)
ddx49 ddx49 coding upstream 47754 16875696 ~ 16885634 (+)
LOC100135798 LOC100135798 coding upstream 105849 16826020 ~ 16827539 (+)
LOC118941434 NA coding upstream 181934 16730401 ~ 16751454 (+)
LOC110491738 NA coding upstream 223703 16695732 ~ 16709685 (+)
LOC110492876 LOC106613263 coding downstream 27113 16962997 ~ 16967790 (+)
LOC110493012 NA coding downstream 40983 16976867 ~ 16980827 (+)
LOC110493316 LOC106573897 coding downstream 46625 16982509 ~ 17136370 (+)
LOC110493709 LOC106573901 coding downstream 308469 17244353 ~ 17256260 (+)
klhl26 LOC106573902 coding downstream 328069 17263953 ~ 17272050 (+)
G15692 NA non-coding upstream 3035 16930117 ~ 16930353 (+)
G15672 NA non-coding upstream 24963 16908170 ~ 16908425 (+)
G15655 NA non-coding upstream 28066 16905119 ~ 16905322 (+)
G15630 NA non-coding upstream 59136 16874029 ~ 16874252 (+)
G15564 NA non-coding upstream 77682 16855475 ~ 16855706 (+)
G15701 NA non-coding downstream 1652 16937536 ~ 16938307 (+)
G15702 NA non-coding downstream 8765 16944649 ~ 16945594 (+)
G15705 NA non-coding downstream 14501 16950385 ~ 16950971 (+)
G15706 rab3a non-coding downstream 16423 16952307 ~ 16952527 (+)
G15708 NA non-coding downstream 20306 16956190 ~ 16956460 (+)
LOC118941201 NA other upstream 352506 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1217706 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1465400 15447458 ~ 15468011 (+)
G13639 NA other upstream 1971385 14961554 ~ 14962003 (+)
LOC110495874 LOC106573877 other downstream 718323 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1040080 17975918 ~ 17991176 (+)
G17420 NA other downstream 1946839 18882723 ~ 18956208 (+)
G18481 NA other downstream 2628965 19564849 ~ 19565221 (+)

Expression


Co-expression Network