LOC110491738


Basic Information

Item Value
gene id LOC110491738
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16695732 ~ 16709685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565707.2
ATGATaactgtacttttagtttatggtaGACACAGCTTGTTCGCACATTTTCCAATTTTACCACTAGTTATGAACGCAACATGAGTTTCTACATCCCCCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGAGTACCACTGCACACCTGCCTGTCTACCAGCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTACCTGTCCATCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA
>XM_021565630.2
GATaactgtacttttagtttatggtaGACACAGCTTGTTCGCACATTTTCCAATTTTACCACTAGTTATGAACGCAACATGAGTTTCTACATCCCCCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGGACCTGTTTCCCAACCCAGAGTACCACTGCACACCTGCCTGTCTACCAGCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTACCTGTCCATCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA
>XM_021565464.2
CAACATGAGTTTCTACATCCCCCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGGACCTGTTTCCCAACCCAGAGTACCACTGCACACCTGCCTGTCTACCAGCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTGAGATGCTGCAGTGTTTCAACTGTACTGATGCAGCATGTACAAACTCTTCTTTAGTTACCTGTCCATCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA
>XM_021565551.2
CCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGAGTACCACTGCACACCTGCCTGTCTACCAGCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTGAGATGCTGCAGTGTTTCAACTGTACTGATGCAGCATGTACAAACTCTTCTTTAGTTACCTGTCCATCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565707.2 False 1209 mRNA 0.42 6 16695732 16709685
XM_021565630.2 False 1226 mRNA 0.43 6 16695734 16709685
XM_021565464.2 False 1209 mRNA 0.43 6 16695808 16709685
XM_021565551.2 True 1169 mRNA 0.43 6 16695829 16709685

Neighbor

gene id symbol gene type direction distance location
LOC118941333 NA coding upstream 16892 16672236 ~ 16678840 (+)
LOC118941290 NA coding upstream 71534 16612600 ~ 16624198 (+)
LOC118941201 NA coding upstream 102765 16578956 ~ 16592967 (+)
LOC118941197 NA coding upstream 133548 16555492 ~ 16562184 (+)
LOC110491555 LOC106573918 coding upstream 206792 16479980 ~ 16488940 (+)
LOC118941434 NA coding downstream 20716 16730401 ~ 16751454 (+)
LOC100135798 LOC100135798 coding downstream 116335 16826020 ~ 16827539 (+)
ddx49 ddx49 coding downstream 166011 16875696 ~ 16885634 (+)
LOC110492606 LOC106573909 coding downstream 206797 16916482 ~ 16920945 (+)
LOC110492686 LOC106573907 coding downstream 223703 16933335 ~ 16935884 (+)
G15418 NA non-coding upstream 81078 16613574 ~ 16614654 (+)
G15391 LOC106581772 non-coding upstream 183079 16512426 ~ 16512653 (+)
G15384 NA non-coding upstream 255697 16439823 ~ 16440035 (+)
G15372 NA non-coding upstream 276713 16418405 ~ 16419019 (+)
G15374 NA non-coding upstream 278304 16417221 ~ 16417428 (+)
G15421 NA non-coding downstream 14188 16723873 ~ 16725578 (+)
G15438 NA non-coding downstream 34163 16743848 ~ 16748780 (+)
G15502 NA non-coding downstream 53264 16762949 ~ 16763209 (+)
G15519 NA non-coding downstream 70654 16780339 ~ 16780597 (+)
G15536 NA non-coding downstream 86638 16796323 ~ 16796597 (+)
LOC110490510 LOC106573976 other upstream 980050 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1227744 15447458 ~ 15468011 (+)
G13639 NA other upstream 1733729 14961554 ~ 14962003 (+)
G13434 NA other upstream 1883108 14811771 ~ 14812624 (+)
LOC110492876 LOC106613263 other downstream 253372 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 944522 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1266279 17975918 ~ 17991176 (+)
G17420 NA other downstream 2173038 18882723 ~ 18956208 (+)

Expression


Co-expression Network