RNA id: XM_021565707.2



Basic Information


Item Value
RNA id XM_021565707.2
length 1209
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110491738
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16695732 ~ 16709685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGATaactgtacttttagtttatggtaGACACAGCTTGTTCGCACATTTTCCAATTTTACCACTAGTTATGAACGCAACATGAGTTTCTACATCCCCCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGAGTACCACTGCACACCTGCCTGTCTACCAGCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTACCTGTCCATCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18101 lncRNA upstream 81078 16613574 ~ 16614654 (+) True G15418
TU18096 lncRNA upstream 87055 16605104 ~ 16608677 (+) False G15416
TU18063 lncRNA upstream 183079 16512426 ~ 16512653 (+) True G15391
TU18054 lncRNA upstream 255697 16439823 ~ 16440035 (+) True G15384
TU18042 lncRNA upstream 276713 16418405 ~ 16419019 (+) True G15372
TU18106 lncRNA downstream 14188 16723873 ~ 16725578 (+) True G15421
TU18125 lncRNA downstream 34163 16743848 ~ 16748780 (+) True G15438
TU18197 lncRNA downstream 53264 16762949 ~ 16763209 (+) True G15502
TU18215 lncRNA downstream 70654 16780339 ~ 16780597 (+) True G15519
TU18232 lncRNA downstream 86638 16796323 ~ 16796597 (+) True G15536
XM_036953687.1 mRNA upstream 16892 16672236 ~ 16678840 (+) True LOC118941333
XR_005037575.1 mRNA upstream 71534 16612600 ~ 16624198 (+) True LOC118941290
XM_036953512.1 mRNA upstream 102765 16578956 ~ 16592967 (+) False LOC118941201
XM_036953427.1 mRNA upstream 133548 16555492 ~ 16562184 (+) True LOC118941197
XM_036953308.1 mRNA upstream 206792 16479980 ~ 16488940 (+) False LOC110491555
XR_005037653.1 mRNA downstream 20716 16730401 ~ 16751454 (+) True LOC118941434
XM_021603690.2 mRNA downstream 116335 16826020 ~ 16827539 (+) False LOC100135798
XM_021611281.2 mRNA downstream 116439 16826124 ~ 16827539 (+) False LOC100135798
NM_001124194.1 mRNA downstream 116842 16826527 ~ 16827539 (+) True LOC100135798
XM_021566464.2 mRNA downstream 166011 16875696 ~ 16885634 (+) True ddx49
TU18087 other upstream 114850 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 980050 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1227744 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1733729 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1883108 14811771 ~ 14812624 (+) True G13434
TU18393 other downstream 206814 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 253372 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 944522 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1266279 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 2173038 18882723 ~ 18956208 (+) True G17420

Expression Profile