RNA id: XM_036953687.1


Basic Information

Item Value
RNA id XM_036953687.1
length 1156
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC118941333
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16672236 ~ 16678840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGACCTGTCTCCCAGCCCAGATACCACTGCTGTTCATCTGCCTGTCTACCAGACCAGCCCAGAGTACTGTACCACTGCTGTTCAAatgcctgtctatctgtccagAATGAAGCTtatcctgactctctctctcatctgcacTCTCTTCTGCTCAGtTGAGATGCTGCAGTGTTTCAACGACTCATTTATAGTCAACTGTTCAGCCCCTTTGGGAGAAACATGTCTCACTGCAAACATCAATGCAAAAGGTCTCATCAATTCAACCCAGGTAGTCAAGGAGTGTTCCCCATTCTTCAGCTACGGTGAAGCCACAGTGTCAGTGAACCTGGGCTTCTTACACATTGTCTCTAACCAGTTATTTTGTAACATCGATGGGTGCAACAAACAAACTCTACAGCCTGCCCCCAATGTTCTGGCTAATGGAAGACaatgtccctcctgcagcagcttCAGGGATACGATGTGTAACAGCACTGTGACCTGCCTGGGTGTGGAAGACCAGTGTTTTAGCGGCAGTGTAACACCTGGCATCAATTCTACTACGGTGAATCTCAAGGGCTGTACAACTTCCAACGTGTGCATTTCCATTAATCAACTGCTGCCCTCAATAAGTCAACTGCTGCCCTCAGTGAATCAATTGCTGCCCTCAGCGATTAGCATTAGTAACCTCGGGAATGTGTTCACCTGTAAGACAGCTCCTGTAACTGTAACCACAGCTCCTGTAACTGTAACCACAGCTCCTGTAACTGTAACCACAGCTCCTGTAACTGTAACCACAGCCTCTGTTATTGTAACTACAGGCCCTGTAACAGCCACAGCCTGGTCCATCAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAATTAATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTAGAACACAACATAATGTACAATGATTTTCATGTATTGTGAAATATGTACTATAAGTGAAATTCTGTTATTTATTTGGAATTTTCCAGATGACGCCCTGTTACATTATATAGTGTGTTTGCTTATATATGTATCAGTATATTTTATCAATTGTGATTGCTTGTAAGTTTAAAACAAATAATATGTTTAAATGCCAATAAAGTTTCTATCACTCTACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18101 lncRNA upstream 57582 16613574 ~ 16614654 (+) True G15418
TU18096 lncRNA upstream 63559 16605104 ~ 16608677 (+) False G15416
TU18063 lncRNA upstream 159583 16512426 ~ 16512653 (+) True G15391
TU18054 lncRNA upstream 232201 16439823 ~ 16440035 (+) True G15384
TU18042 lncRNA upstream 253217 16418405 ~ 16419019 (+) True G15372
TU18106 lncRNA downstream 45033 16723873 ~ 16725578 (+) True G15421
TU18125 lncRNA downstream 65008 16743848 ~ 16748780 (+) True G15438
TU18197 lncRNA downstream 84109 16762949 ~ 16763209 (+) True G15502
TU18215 lncRNA downstream 101499 16780339 ~ 16780597 (+) True G15519
TU18232 lncRNA downstream 117483 16796323 ~ 16796597 (+) True G15536
XR_005037575.1 mRNA upstream 48038 16612600 ~ 16624198 (+) True LOC118941290
XM_036953512.1 mRNA upstream 79269 16578956 ~ 16592967 (+) False LOC118941201
XM_036953427.1 mRNA upstream 110052 16555492 ~ 16562184 (+) True LOC118941197
XM_036953308.1 mRNA upstream 183296 16479980 ~ 16488940 (+) False LOC110491555
XM_021565131.2 mRNA upstream 183296 16485474 ~ 16488940 (+) True LOC110491555
XM_021565707.2 mRNA downstream 16892 16695732 ~ 16709685 (+) False LOC110491738
XM_021565630.2 mRNA downstream 16894 16695734 ~ 16709685 (+) False LOC110491738
XM_021565464.2 mRNA downstream 16968 16695808 ~ 16709685 (+) False LOC110491738
XM_021565551.2 mRNA downstream 16989 16695829 ~ 16709685 (+) True LOC110491738
XR_005037653.1 mRNA downstream 51561 16730401 ~ 16751454 (+) True LOC118941434
TU18087 other upstream 91354 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 956554 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1204248 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1710233 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1859612 14811771 ~ 14812624 (+) True G13434
TU18393 other downstream 237659 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 284217 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 975367 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1297124 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 2203883 18882723 ~ 18956208 (+) True G17420

Expression Profile