RNA id: XM_021565131.2


Basic Information

Item Value
RNA id XM_021565131.2
length 2244
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110491555
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16479980 ~ 16488940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgatCGATGCTATGtgcaaggaccgctacttcgattcagacaagaaacagggtttacgtgaaatgttacatacacaactggacaagatggaaacggacacagggacagtgcgcaccgaggaagagtggccacggacagacagagctgaaacttcactgcttgacatatATGATGTAACTCTGGTTGATAATAAAACGACTGAACAACGAAATAGCACAGCaaACTACCCCTACTGAGACCAACGTGATCCCCACCATGAACCCCAAACTGACCCAGGAACAGGAGAAACAGCTGTGTTCCTTACTGGGAAACATCAAACTCAGCCTGCTGTTCAAGGCCAGTATACATGGCTACACAGGAGCAGCCTTTCACCAGAAATGTGACCACCAAGGTCCCACAGTCTCTGTAGGATATAACTCCACAGGGTTTGTTTTTGGAGGCTACACAAGTAAAGATTATGACGTAGCCAAGCAAGGCCAGTACATACAGGATGACAAAGCCTTTTTGTTTAGTTTAACTGGTAGAAATCCTGTCAGGTATCCCGTCACAAATGCCCAATATGCGGTCAAAATGCATAACACAACTGGCCCTTACTTTGGGGAGGATTTGCTGTTAATGAACGCTAACACAGCTACAGTGATCAGCATTCCAGGAAACTACTacatcttcaatgctgcagaaatgcatGGCAATAACCTTAACCTAACTGAGTGTGAGGTGTATAAAGTGGAAGaAGGTGGTAACATCATCGAAAAGCCATGGAGGACAATTCTTTGGAAAGCTGAGAGGAGAAAGGAGCTGATGGAGTCTGTTAAGCTCTACAGGCCCATGATCAGTTCTGTGGGTCAGGCTAGAGTTCTACTCATCGGCCCCGTCGGCGCTGGAAAGTCCAGCTTTTTCAACTCTGTCAACTCCATCTTCCGAGGCCACGTGACCAGCCAGGCCATATCGGGCAATTCTGGAACCAGTCTGACCACTCAGTTTCGCACCTACTCAGTTAAGGCTGGACGCGATGGCAAACCGCTGCCAATCATTTTGTGTGACACGATGGGAATGGAGGAGGCCACAGGGGCGGGGCTAGATGTGGATGACATCGGCAGCATTCTGAAAGGCCATGTGCCAGACAGATACCGGTTCAACCCATCAGTCCCTCTGCAAGCAGATGCCCACGGATTCCAGCAGTCAGTGAACCTGCATGAGAGGATCCACTGTGTGGTGTACGTCATGGACACCTGCAAAGTCTCCATTATGTCAACCAAACTAGAGGAGAAACTGGCAGCCATTCGCAGGAGGGTCAACCTGCtagGCATCCCACAGCTGGTTCTTCTTACCAAGGTGGATGAGGCCTGTCCCTGTGTGGCTGACAACTTGAGGAACGTGTATAACAGCCAGTACATAAAGACCAAGGCCCAGGAGGTGAGTGGCCGTCTGGGGGTACCCATGTCCTGCATTGTCCCAGTAAAGAACTACAGTGAAGAGCTGGAGCTGGACATGAGCTGTGACATCCTGCTCCTCAGTGCCCTGATCCAGATGCTCCGCTTCGCAGACAACTACTTTGATGAAGTCAACGACCAAGAGAAGCACGACTAGACAAAGTGGAGGAGATAacccagcatggtggtggtatttCCTTTCTATGCCACCTTGTTTAGCCCTCTCTCTGCTTCATTCTGTATATCTTGTTCTATGGTGTTCACGTAATCATAATTATGATGACTAGTTATCCATTACACAAAACTACAGGATGATAAGAATATCTTAACATGCCTCATTGAGCCTACATCTTGAATATTTGATTCAATTGCTAGAAATAATCTGTATTAGGCCTAGATTGAAAGTTAGTTCACTAGGGTTGCTAATTCTGTTTACATCATTGTGATTGTTTGGATTACATGGGATAGGTGAAAGGATTGGGTTTTCTTCATATGTTCATTGGTTGCTTTGAATCAAACTAAagacaccaccactctatactaGTTGATCCTACATAGTCAGTTCTTGGATAGTCTCATATAGCAATCTGCTCCTCAGAATATACCCCCGCTGAAGAAAAGGACAAGGTAAAACTTAGTACAAGATCATGTAGTTTTTATATTGGATTCACTACACATTTGGCTTGCAAATGCTTGAAGTttcaccactagatggcagtatatCACCATGAAAGTGAAAATAAATTGTTATTAACAGTGTGTGCTGCTGTTGGAAAAGCTGCCCATTAAAGTTACCTTTGTTGAATATCA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18054 lncRNA upstream 45439 16439823 ~ 16440035 (+) True G15384
TU18042 lncRNA upstream 66455 16418405 ~ 16419019 (+) True G15372
TU18044 lncRNA upstream 68046 16417221 ~ 16417428 (+) True G15374
TU18038 lncRNA upstream 78074 16406601 ~ 16407400 (+) True G15368
TU18035 lncRNA upstream 80317 16404867 ~ 16405157 (+) True G15365
TU18063 lncRNA downstream 23486 16512426 ~ 16512653 (+) True G15391
TU18096 lncRNA downstream 116164 16605104 ~ 16608677 (+) False G15416
TU18097 lncRNA downstream 116164 16605104 ~ 16725738 (+) True G15416
TU18101 lncRNA downstream 124634 16613574 ~ 16614654 (+) True G15418
TU18106 lncRNA downstream 234933 16723873 ~ 16725578 (+) True G15421
XM_036952860.1 mRNA upstream 304492 16157937 ~ 16180982 (+) False LOC110491417
XM_036952900.1 mRNA upstream 304492 16157937 ~ 16180982 (+) False LOC110491417
XM_036952929.1 mRNA upstream 304492 16168382 ~ 16180982 (+) True LOC110491417
XM_036952967.1 mRNA upstream 308793 16157932 ~ 16176681 (+) False LOC110491417
XM_021564067.2 mRNA upstream 509618 15922503 ~ 15975856 (+) True LOC110490588
XM_036953427.1 mRNA downstream 66552 16555492 ~ 16562184 (+) True LOC118941197
XM_036953512.1 mRNA downstream 90016 16578956 ~ 16592967 (+) False LOC118941201
XR_005037575.1 mRNA downstream 123660 16612600 ~ 16624198 (+) True LOC118941290
XM_036953687.1 mRNA downstream 183296 16672236 ~ 16678840 (+) True LOC118941333
XM_021565707.2 mRNA downstream 206792 16695732 ~ 16709685 (+) False LOC110491738
TU17062 other upstream 769792 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1017486 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1523471 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1672850 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 1784744 14700176 ~ 14700730 (+) True G13391
TU18087 other downstream 90146 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 427559 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 474117 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1165267 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1487024 17975964 ~ 17991176 (+) True ccdc124

Expression Profile