RNA id: XM_036953512.1


Basic Information

Item Value
RNA id XM_036953512.1
length 1290
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC118941201
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16578956 ~ 16592967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCATGATaactgtacttttagtttatggtaGACACAGCTTGTTCGCACATTTTCCAATTTTACCACTAGTTATGAACGCAACATGAGTTTCTACATCCCCCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGGACCTGTTTCCCAACCCAGAGTACCACTGCACACCTGCCTGTCTACCAGTCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTGAGATGCTGCAGTGTTTCAACTGTACTGATGCAGCATGTACAAACTCTTCTTTAGTTACCTGTCCAGCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18063 lncRNA upstream 66303 16512426 ~ 16512653 (+) True G15391
TU18054 lncRNA upstream 138921 16439823 ~ 16440035 (+) True G15384
TU18042 lncRNA upstream 159937 16418405 ~ 16419019 (+) True G15372
TU18044 lncRNA upstream 161528 16417221 ~ 16417428 (+) True G15374
TU18038 lncRNA upstream 171556 16406601 ~ 16407400 (+) True G15368
TU18096 lncRNA downstream 12137 16605104 ~ 16608677 (+) False G15416
TU18097 lncRNA downstream 12137 16605104 ~ 16725738 (+) True G15416
TU18101 lncRNA downstream 20607 16613574 ~ 16614654 (+) True G15418
TU18106 lncRNA downstream 130906 16723873 ~ 16725578 (+) True G15421
TU18125 lncRNA downstream 150881 16743848 ~ 16748780 (+) True G15438
XM_036953427.1 mRNA upstream 16772 16555492 ~ 16562184 (+) True LOC118941197
XM_036953308.1 mRNA upstream 90016 16479980 ~ 16488940 (+) False LOC110491555
XM_021565131.2 mRNA upstream 90016 16485474 ~ 16488940 (+) True LOC110491555
XM_036952860.1 mRNA upstream 397974 16157937 ~ 16180982 (+) False LOC110491417
XR_005037575.1 mRNA downstream 19633 16612600 ~ 16624198 (+) True LOC118941290
XM_036953687.1 mRNA downstream 79269 16672236 ~ 16678840 (+) True LOC118941333
XM_021565707.2 mRNA downstream 102765 16695732 ~ 16709685 (+) False LOC110491738
XM_021565630.2 mRNA downstream 102767 16695734 ~ 16709685 (+) False LOC110491738
XM_021565464.2 mRNA downstream 102841 16695808 ~ 16709685 (+) False LOC110491738
TU17062 other upstream 863274 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1110968 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1616953 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1766332 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 1878226 14700176 ~ 14700730 (+) True G13391
TU18393 other downstream 323532 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 370090 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1061240 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1382997 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 2289756 18882723 ~ 18956208 (+) True G17420

Expression Profile