RNA id: XR_005037575.1


Basic Information

Item Value
RNA id XR_005037575.1
length 1337
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC118941290
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16612600 ~ 16624198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGCCTCTAGACCAACTTAGTTGTGAGAAAGTCTGTATCTTTAGAGGAGGTAGCCATATGACTGTATCATTTATTGATATTCTCCTAATTAGTGATTAACTGACGGTTCTTAGCAGGATTGGGctaaatgctgaaataaaaacCTGAGGTGAAGAACTATCTTTCCCTGCAGTAGAAGTCCatgtgagaggagagagctgtATGATACTAGAAGGACAAGACACCAATAAGGGGCTCACAGCAGGTGGGCTTTTCTCCTATCCAGAGCACCAACTGAAACAGACAGAATGAACAGAGCACGAGGACTGTGTTTCACTTTACTACTACTGGGGTGTGTACATGGGAGCAAGTCTCCTCAAAGAGAAGTGGTATTCAGTAGAGGGATCCAACTCTTTGTTGAAGGTTTGAACCCTTCTAATCCCTCTGTAGTAATCCTCTCCTCATTTGGGCACAACCCTGGTGCTTCAGCTACACTGGTGTGTATACTCAGTGGTTTAAAAACACACCATTTGTTGGACATCATTTGGTGGATCAACAACACAGTGGTAACCCCTGAGAACAATGCCATTTGGAGTTCCAGGGGAAGTGATGGCACGTACACAACTACCGGACTGTGGACTATGTCTGGAAAGGACTGGAATCCCTATAGTAACTATGAGTGTGGAACCAGACATGAAGGAAAGCATTATAGAAATGGTACACAGCCCTCACTTTGCATGGATTTTACTTGATTACAAATATTTGTTAACCTATCAAAAATTATCCTTAGCATTTCATGTACAATCTTTACTATTATTAAAGTATTCATGATGTTTCTTGAGTATTTTATTGAAagatcaggtagcctagtggttagagctttggaatagtaactgaaaggttgcaagttcaaatccctgagttgacaaggtacaaatctgttgttcttccccttaagagacagttaacccactgttcctaggctgtcactgaaaataagaatttgttcttaactgatttgcctagttaaagaaaaaaatacaaataaataaatacagattATCATTCTAGTTGCCATTACCATATGTTGACACTAGATGGTGCTCACTGCCTGCAGTTGTAGTGTTTGTGTTGAGTGATGGTAAATTCATATGCATGGCATCTCTGTTTCACAAACTCACTGATTTCAACTGAGACAATGCTGCTCTTGTTCCTGGATGTATCTCTCAACAACAAGCTGTTATACAAATGGTCATATGCACAAAGCTGAATACTCTTTAGTTTATGTTCCAAACAACAATTGTGTTTCTGTCAGCCCTTTAAAAATATTTTTGCATAATTTATAAGTTCATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18096 lncRNA upstream 3923 16605104 ~ 16608677 (+) False G15416
TU18063 lncRNA upstream 99947 16512426 ~ 16512653 (+) True G15391
TU18054 lncRNA upstream 172565 16439823 ~ 16440035 (+) True G15384
TU18042 lncRNA upstream 193581 16418405 ~ 16419019 (+) True G15372
TU18044 lncRNA upstream 195172 16417221 ~ 16417428 (+) True G15374
TU18106 lncRNA downstream 99675 16723873 ~ 16725578 (+) True G15421
TU18125 lncRNA downstream 119650 16743848 ~ 16748780 (+) True G15438
TU18197 lncRNA downstream 138751 16762949 ~ 16763209 (+) True G15502
TU18215 lncRNA downstream 156141 16780339 ~ 16780597 (+) True G15519
TU18232 lncRNA downstream 172125 16796323 ~ 16796597 (+) True G15536
XM_036953512.1 mRNA upstream 19633 16578956 ~ 16592967 (+) False LOC118941201
XM_036953427.1 mRNA upstream 50416 16555492 ~ 16562184 (+) True LOC118941197
XM_036953308.1 mRNA upstream 123660 16479980 ~ 16488940 (+) False LOC110491555
XM_021565131.2 mRNA upstream 123660 16485474 ~ 16488940 (+) True LOC110491555
XM_036952900.1 mRNA upstream 431618 16157937 ~ 16180982 (+) False LOC110491417
XM_036953687.1 mRNA downstream 48038 16672236 ~ 16678840 (+) True LOC118941333
XM_021565707.2 mRNA downstream 71534 16695732 ~ 16709685 (+) False LOC110491738
XM_021565630.2 mRNA downstream 71536 16695734 ~ 16709685 (+) False LOC110491738
XM_021565464.2 mRNA downstream 71610 16695808 ~ 16709685 (+) False LOC110491738
XM_021565551.2 mRNA downstream 71631 16695829 ~ 16709685 (+) True LOC110491738
TU18087 other upstream 31718 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 896918 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1144612 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1650597 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1799976 14811771 ~ 14812624 (+) True G13434
TU18393 other downstream 292301 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 338859 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1030009 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1351766 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 2258525 18882723 ~ 18956208 (+) True G17420

Expression Profile