RNA id: TU18106


Basic Information

Item Value
RNA id TU18106
length 1510
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id G15421
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16723873 ~ 16725578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAGTCAGTCAAGGATGTTCATACAGGGTGGTTAAATGTCAGATGTTCCGATAGCTGATGTTCCAATAGCTAACTAAAACGTCAATAAAGGGTATTATTGAGAATACCGTCTGCTGAACGATCCGACTGTTGTACACCTGGGTGATGTCACGGGCAGTTTCCTGACACACCTGGTCCACGTGTGTCAGCAGTGCCACTTGATGCACACCTACAAAACACATTTGTTTcacacactgtcaactgacaGAATTGACCACAGTCCCTACAACCATTACTTCCATTGCGAAAAAGCTTCTTGTATTGCTCACCCAGGTCACTGATGTGTTCTCGGAGCTGTTGGAAGGTGGTGCCCAGACCTTTGGTGTAGCTGGACACTTTAGAAGCATCCACCACAAAGACGACACAGTGGACCTTGTCTTTAAGGGACGGCTTCTTTACATACCCCACAGTCTCTGATCTCACAGGCTGCTCAGGACTGAACTGTAGAGGATGGATGAGAACATTAGCTTGGTTGTtcaaaccaaccagctgagagagTATTTATAATATTCTCTACTGAACAGAGAAATGTATATCAGGGGTGAGCAACTCCTATCTTGTGAGGCTGCCTGCATGAGTATGTTCCAACCCAGCACTATCTCACCTGAATCATAATAGTGGTCTAAATTGCAGACtgtgattagttgaatcaggtgtgttagaacTAAACTGGAACAAAAATCGGCACACACTGTGTGTTAGAGCAGACCTGGAACACACTGTGGCCGCTGTTGCTCAACTCCGAGTTATATGAATGTTACACACACTGTGCCCCTGTAATTTTAACGTCGACATCCAATACTTGCATTCTTTCTTACACACAACGGTGGCACCTGTGTCCTTTCTCCCTCACGTACCTTGTGTCCCTCGGGTGCATGGCCTTTGATGATAGCCAGAGTGTCATGGAGGGTTAGTCCAGTGGTCTCCCCATCTCCCAGACCCATGACATCACACAGGACCAGCGCAGTAGGCTGCTCTGGACTCCGCCCACGGATGTTGAACAACTGGAGCTTTTGGTGAAGCTGGCAGAGGAAGAGCCAACCATGGCCCGGTTAGTGAATCTTCCTGTGAAGACTGACTGAACAGAGCTGATGAAGCTGGACTTGCCGGCTCCGACAGGACCCAGCAGCAGAACCCGAGCCTCAGACAAAGCCTCAAAACCAGGCTTATAGGAACTGATAGACTCCATCAGGGTCTCCCTGCGACTGGGCAAACATTGGTCATTAACAATTAAATATAATTACATGGTGGATTGTTTAGTAGGCCTAGTTGGTGTACATAGGTAAGTGTGAGTGTATTGTTGTGATACCCTACTCACTCCTCAGTCCATGCCACCTCCCTCCATGGGGACTCCATCTTACTTTTCCACTGTTCTGCCCCTAGCAGGCCTAGAGTTGAGAGAGTATAGTGTAAGAGCAAACTAATGAAAATCATGAATTATCAGGTAAGTGTAGTCTACTGGAAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18101 lncRNA upstream 109219 16613574 ~ 16614654 (+) True G15418
TU18096 lncRNA upstream 115196 16605104 ~ 16608677 (+) False G15416
TU18063 lncRNA upstream 211220 16512426 ~ 16512653 (+) True G15391
TU18054 lncRNA upstream 283838 16439823 ~ 16440035 (+) True G15384
TU18042 lncRNA upstream 304854 16418405 ~ 16419019 (+) True G15372
TU18125 lncRNA downstream 18270 16743848 ~ 16748780 (+) True G15438
TU18197 lncRNA downstream 37371 16762949 ~ 16763209 (+) True G15502
TU18215 lncRNA downstream 54761 16780339 ~ 16780597 (+) True G15519
TU18232 lncRNA downstream 70745 16796323 ~ 16796597 (+) True G15536
TU18234 lncRNA downstream 71734 16797312 ~ 16797600 (+) True G15538
XM_021565707.2 mRNA upstream 14188 16695732 ~ 16709685 (+) False LOC110491738
XM_021565630.2 mRNA upstream 14188 16695734 ~ 16709685 (+) False LOC110491738
XM_021565464.2 mRNA upstream 14188 16695808 ~ 16709685 (+) False LOC110491738
XM_021565551.2 mRNA upstream 14188 16695829 ~ 16709685 (+) True LOC110491738
XM_036953687.1 mRNA upstream 45033 16672236 ~ 16678840 (+) True LOC118941333
XR_005037653.1 mRNA downstream 4823 16730401 ~ 16751454 (+) True LOC118941434
XM_021603690.2 mRNA downstream 100442 16826020 ~ 16827539 (+) False LOC100135798
XM_021611281.2 mRNA downstream 100546 16826124 ~ 16827539 (+) False LOC100135798
NM_001124194.1 mRNA downstream 100949 16826527 ~ 16827539 (+) True LOC100135798
XM_021566464.2 mRNA downstream 150118 16875696 ~ 16885634 (+) True ddx49
TU18087 other upstream 142991 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1008191 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1255885 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1761870 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1911249 14811771 ~ 14812624 (+) True G13434
TU18393 other downstream 190921 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 237479 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 928629 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1250386 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 2157145 18882723 ~ 18956208 (+) True G17420

Expression Profile