Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001124194.1 |
| length | 451 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 4 |
| gene id | LOC100135798 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 16826020 ~ 16827539 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02927 | RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU18234 | lncRNA | upstream | 28927 | 16797312 ~ 16797600 (+) | True | G15538 |
| TU18232 | lncRNA | upstream | 29930 | 16796323 ~ 16796597 (+) | True | G15536 |
| TU18215 | lncRNA | upstream | 45930 | 16780339 ~ 16780597 (+) | True | G15519 |
| TU18197 | lncRNA | upstream | 63318 | 16762949 ~ 16763209 (+) | True | G15502 |
| TU18125 | lncRNA | upstream | 77747 | 16743848 ~ 16748780 (+) | True | G15438 |
| TU18250 | lncRNA | downstream | 6331 | 16833870 ~ 16834176 (+) | True | G15552 |
| TU18261 | lncRNA | downstream | 27646 | 16855185 ~ 16855466 (+) | True | G15563 |
| TU18262 | lncRNA | downstream | 27936 | 16855475 ~ 16855706 (+) | True | G15564 |
| TU18338 | lncRNA | downstream | 46490 | 16874029 ~ 16874252 (+) | True | G15630 |
| TU18368 | lncRNA | downstream | 77580 | 16905119 ~ 16905322 (+) | True | G15655 |
| XR_005037653.1 | mRNA | upstream | 75073 | 16730401 ~ 16751454 (+) | True | LOC118941434 |
| XM_021565707.2 | mRNA | upstream | 116842 | 16695732 ~ 16709685 (+) | False | LOC110491738 |
| XM_021566464.2 | mRNA | downstream | 48157 | 16875696 ~ 16885634 (+) | True | ddx49 |
| XM_021567067.2 | mRNA | downstream | 88943 | 16916482 ~ 16920945 (+) | False | LOC110492606 |
| XM_036954805.1 | mRNA | downstream | 88943 | 16916482 ~ 16920945 (+) | False | LOC110492606 |
| XM_021567175.2 | mRNA | downstream | 105849 | 16933388 ~ 16935884 (+) | False | LOC110492686 |
| XM_021567371.2 | mRNA | downstream | 135458 | 16962997 ~ 16965857 (+) | False | LOC110492876 |
| TU18087 | other | upstream | 245645 | 16579086 ~ 16580882 (+) | True | LOC118941201 |
| TU17062 | other | upstream | 1110845 | 15695041 ~ 15715682 (+) | True | LOC110490510 |
| TU16507 | other | upstream | 1358539 | 15459904 ~ 15467988 (+) | True | sass6 |
| TU16116 | other | upstream | 1864524 | 14961554 ~ 14962003 (+) | True | G13639 |
| TU15897 | other | upstream | 2013903 | 14811771 ~ 14812624 (+) | True | G13434 |
| TU18393 | other | downstream | 88960 | 16916499 ~ 16920409 (+) | True | LOC110492606 |
| TU18429 | other | downstream | 135518 | 16963057 ~ 16967790 (+) | True | LOC110492876 |
| TU19135 | other | downstream | 826668 | 17654207 ~ 17665008 (+) | False | LOC110495874 |
| TU19716 | other | downstream | 1148425 | 17975964 ~ 17991176 (+) | True | ccdc124 |
| TU20408 | other | downstream | 2055184 | 18882723 ~ 18956208 (+) | True | G17420 |
