RNA id: XM_036954805.1


Basic Information

Item Value
RNA id XM_036954805.1
length 1976
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC110492606
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16916482 ~ 16920945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTATTGACTTATGGTACACTTGTGTCGACAACTTCCGTTAAACTTCCGCACGTTAAACATTAGCGTTAGTAAAGAATTAATGCCCAAAATATTCAGTTCAGTTGACCGGATAGTTTGTAATATAATCTGTTATAATGCTACCTCTATCTTTGCTGAAGACTGCACAGAACCACCCTATGCTGGTGGAGTTGAAGAATGGAGAGACGTATAACGGACACTTGGATGGAGATAAATTTTGGAGGATGCCTGAGTGTTACATCAGAGGAAGCACCATAAAGTACCTGCGTATCCCTGATGAGATCATTGACATGGTGAAGGAAGAGGTGGTGTCCAAGGGCCGTGGGCGAGGAGGCATGCAGCAGAACAAACAGCAGGGCAAGGGTCGAGGGGGAGGAGCAGGCAGAGGTGTTTTTGGAGGCCGTGGTCGGGGCATGCCAGGAGTGGGAATGCCAGGAGTGGGCAGAGGCCAGCAGCAGGAGAAGAAGCCTGCTGGTGGCAAACCTCAGGGAGTCAAGAACCAGCACtgaggagaggaacagacaggTCAAATGTAAGGAACGAGTGTAGTTTTCACAGAATGACAACTCTATCAGTCAGTGGAGGTCACCTTACACAATGGCTGTTGTAATGGCTATTACTGCTCCCTCACTGCCATTTCTTAGTCATTTGTGTTTGACCTCCACCAATTTGTGAAATCACAACGTGAGAACTATGAATATTCTGTGCAGTTCAGAAAGGGCAGGGTTTTGTAGACAGATTTTTGCCTTAAAGTTTTTGTTTAGTTTTCAATTTGGGCCACCGTCAGAAACATGTAATTATCGTCCACAAGAACTCAACAGTAACCGAAATTTGAGAAGTTCAATGTTATTGTTTTATTGTGCCCAGAGCAATCGACTACGTTGATTGTACCCAATTGTCTTCAGTGTAATATAAGCTATGTAAAGCACCCATTTTTGGCATCCATTTTATGCCCTTGGAATTTGAAGACTTAAGTTGATTGTGTTATGAGGAATAATACCTAGTTGGTTAAAGAAATGTCAAGAAGTCTGGCAGTTTATTTTCAGAGTCCCAATTGGGGGTTTctaaatgttttacttttgtgGAGTTTATTTGCAAATTGCAACATGAGACAATAATGTTGTAATTTAGCCTATACAAAATAACAtgagaataaatgttttgttaagTATACTGTACTTGAATGTATGAAAGAACAATAACTATTGGATTTGTTTTGAATGGGTCTACATACATAATGAAAAGGTATTTTGCTACGCTCATGCTAGCTTACCTCTAAAATGACAAAACACAATTTGCATGGCAGGTTTATGTTCTTGTATAACTAACCAGCTATAAAAATAAAAAGTCAACATAAACAATCAAGCATGCATATAACAAAGCTGGTGTAACCCTTTCTCTAGCCCCCTAAAGCACAACCGCAATCACACAGCTGCTGAATCAGCAATAATGCAGCCCTGATTAACATGACGCTATAATTCATGGAGTTAAATATCACGTGAGATGGTGACTGATTTATGATGCTGTTCTATGAGTTTTATTACTGTAGTCTTGCATGTCTTGTGGCTGTTTTGAAATGAATCAGAATGGAACATAATCGCTGTTAGTTTCAGTTAAAACATGAAGCTCTGGAAAAAAACATTCTCACTTTAATTTGCATGAAAAGCTAGCTTCAATTGAAAATGTAAAATGCATGGTAGTTATTTGACAATGGGTTGGTGGAAATTATGAGGAGATGGTTTCTCTACCTCTGAAATATTTGTATCAggcaaaaaaaagtgtttttcaaTACCAAACTCCCTAAGCACTGGTTTAGTGTCCCATAAATGTTATGAGACCAATGTGCCACATCTCTTTCTTGAAGAATATGACCCTGGATATCAAAGTTATGTAGCACTTTAACAGAATTTTGTTCTCCAAGTTTGGCGCTCAGTCATAAAAAACGCTTGTTTGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18387 lncRNA upstream 8057 16908170 ~ 16908425 (+) True G15672
TU18368 lncRNA upstream 11160 16905119 ~ 16905322 (+) True G15655
TU18338 lncRNA upstream 42230 16874029 ~ 16874252 (+) True G15630
TU18262 lncRNA upstream 60776 16855475 ~ 16855706 (+) True G15564
TU18261 lncRNA upstream 61016 16855185 ~ 16855466 (+) True G15563
TU18409 lncRNA downstream 9172 16930117 ~ 16930353 (+) True G15692
TU18415 lncRNA downstream 12390 16933335 ~ 16933590 (+) True LOC110492686
TU18418 lncRNA downstream 16591 16937536 ~ 16938307 (+) True G15701
TU18419 lncRNA downstream 23704 16944649 ~ 16945594 (+) True G15702
TU18422 lncRNA downstream 29440 16950385 ~ 16950971 (+) True G15705
XM_021566464.2 mRNA upstream 30848 16875696 ~ 16885634 (+) True ddx49
XM_021603690.2 mRNA upstream 88943 16826020 ~ 16827539 (+) False LOC100135798
XM_021611281.2 mRNA upstream 88943 16826124 ~ 16827539 (+) False LOC100135798
NM_001124194.1 mRNA upstream 88943 16826527 ~ 16827539 (+) True LOC100135798
XR_005037653.1 mRNA upstream 165028 16730401 ~ 16751454 (+) True LOC118941434
XM_021567175.2 mRNA downstream 12443 16933388 ~ 16935884 (+) False LOC110492686
XM_021567371.2 mRNA downstream 42052 16962997 ~ 16965857 (+) False LOC110492876
XM_021567385.2 mRNA downstream 55922 16976867 ~ 16980827 (+) False LOC110493012
XM_021567397.2 mRNA downstream 55922 16976867 ~ 16980827 (+) True LOC110493012
XM_036955227.1 mRNA downstream 61564 16982509 ~ 17136365 (+) False LOC110493316
TU18087 other upstream 335600 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1200800 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1448494 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1954479 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 2103858 14811771 ~ 14812624 (+) True G13434
TU18429 other downstream 42112 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 733262 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1055019 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1961778 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2643904 19564849 ~ 19565221 (+) True G18481

Expression Profile