RNA id: XM_021567385.2


Basic Information

Item Value
RNA id XM_021567385.2
length 1289
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110493012
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16976867 ~ 16980827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATAATGTGGACGTGTTGTTGAGTTGAGTGTCTTTACCTCTAGGGCAACATGGCAGGTGTAATGGGTGTCACTATATTTATATCATTTGTTTCGGTAGCCGTCGCTCTTGGGTCCTCTGGAGCCCTATCATCAACCTTGACAGTGACTCCAATGAAGGCAACCACCAGGAATACCCCAACATTGTCTGTCACCATCCCCACAGTGGCCCCTGCCATGCCAACCAGTAGGACAAGTTCATCAGTCAGTGAAGCACCTAATACAGATCCTACTGGTGACACTAGAGTCCCAATGGAATCATCCCCTTCATCACCTGCAACTGAGCCTTCCCAATACTCTCAGCCACTGACTCCATCACAATCATCCAATGGCAGCACCACCACACAAACCTCTACAGGTTTTACAGCTGACACTACTATGAATCAGACCCTAACTGGAATAGTTGGTCATGACTCAACATCCTCAATCTTCTCATCAACATTGTCGCCAAGCTCTGATTTTACGACAGGGAACATGAGCTCAAGCACAGCCTTAGAAAGTGATGGGAGACATGTCTTATCAAGGAGTCCGGGCCTCGTAGCAGTCCTCTGCATATTCTGCATCTGTCTGGGTCTTCTGCTGGCTGTTGGAATTGCAAAGCTCATTACTCCCAGAGGTTCAACATTTCAGAGGCTTGAAGATGTGCCATTGGGCAAAATAAATGAAGAGTCTCCATTTGCCCGTTACCCTGAAAAACAATTCTGAAAGAAAACACATCATGAGAGAAGGTATTCTATTTGGGGTTCAGACAACGTTGTTCATGAGGACGTGTCACCCACCATCATGTTTATGttcctgtttttgtttgtttattttgtcTGGCTGCTGGAAAGTGACGTGTGTTTGAAGGAAGTCAGTATAGGCACTAAAAGCAATCCTGTGATGTGGTAAAGAATATCTCCTCCCAGGTTGGTCAGCAGCATACTGAAGTCGATCGTTGGTACTGTTCATTCACAGGTGGATGGATGCATCAAGGAACTGAATACAGAAGATGCACAGACAATGTCTGCGTTTACACaggtagcccaattctgatcttttgccaaaTTTTTAGCGAAAGATCTGATTTGTAAAAATACAAATTATTGGCACAatatcagaattggtctgccttTATAAACACAGCTAATGTGTCAGGTATCACTAGAAATAAAGCTATTAAAAAAGCTATAATAAAGCCAAATTCTCTGTTTCTTGAAAAGACTATGAGAAACAGGCCTAATTTTTGTATgggttgaaataaataaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18462 lncRNA upstream 3499 16973141 ~ 16973368 (+) True G15743
TU18435 lncRNA upstream 6644 16969905 ~ 16970223 (+) True G15717
TU18425 lncRNA upstream 20407 16956190 ~ 16956460 (+) True G15708
TU18423 lncRNA upstream 24340 16952307 ~ 16952527 (+) True G15706
TU18422 lncRNA upstream 25896 16950385 ~ 16950971 (+) True G15705
TU18473 lncRNA downstream 153313 17134140 ~ 17136370 (+) True LOC110493316
TU18638 lncRNA downstream 259564 17240391 ~ 17240617 (+) True G15891
TU18610 lncRNA downstream 276601 17257428 ~ 17257827 (+) True G15865
TU18649 lncRNA downstream 329058 17309885 ~ 17313925 (+) True LOC110494078
TU18676 lncRNA downstream 333739 17314566 ~ 17314970 (+) True G15928
XM_021567371.2 mRNA upstream 11010 16962997 ~ 16965857 (+) False LOC110492876
XM_021567175.2 mRNA upstream 40983 16933388 ~ 16935884 (+) False LOC110492686
XM_021567067.2 mRNA upstream 55922 16916482 ~ 16920945 (+) False LOC110492606
XM_036954805.1 mRNA upstream 55922 16916482 ~ 16920945 (+) False LOC110492606
XM_021566464.2 mRNA upstream 91233 16875696 ~ 16885634 (+) True ddx49
XM_036955227.1 mRNA downstream 1682 16982509 ~ 17136365 (+) False LOC110493316
XM_036955294.1 mRNA downstream 1682 16982509 ~ 17136365 (+) False LOC110493316
XM_036955434.1 mRNA downstream 1683 16982510 ~ 17136365 (+) False LOC110493316
XM_021567662.2 mRNA downstream 30078 17010905 ~ 17136365 (+) False LOC110493316
XM_021567741.2 mRNA downstream 106346 17087173 ~ 17136365 (+) False LOC110493316
TU18429 other upstream 9077 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 56458 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 395985 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1261185 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1508879 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 673380 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 995137 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1901896 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2584022 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2587958 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile