RNA id: XM_036955434.1


Basic Information

Item Value
RNA id XM_036955434.1
length 6587
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110493316
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16982509 ~ 17136370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTAAATCAACGTCATTCGCAACGAAAGCAGCATTCACGGAGTTTGAAGTCTAAGTAAAAGCAATAAAATGTATGATAAAGACAACGACCTTCAATGAAGAGACCAGAACTAAATATTCCTTCATAACTTGCAATTGCCGTGGGTTTCCTTCTCTAAATACTCAAGAAGTCGAGCGACCAAAGCTGCAATCCTACCACACCGGGTGAAGGTATCCCAGAGCTTCTGCGTCAATGGCTAGGCCGTCGACAGAGAGTCGGCGGgactctctccccctggccaACCCCAGCTATGCATTGCGTCGGCGTTTCTCAGGGACGGTGTTGCTGCCCCCGCTGTCCCGGCGCCACTCCACCTACGCCCAGGACAACCGCAGGCTTCTACACCTGGAAGCTCTCTATAGGAAGGCCCTGGCTGGCGTAGAAGCCACGAGCCTGGAAACCATCGACGACTGCAACTTTGATGTGGAGAATGGGCTGTCGGTGGGGCGCAGTCCCCTGGACCCCCAGGTCAGCCCCATCTCTGGCCTGGTCCTACAGGCCAACTACCCCCACAGCCAGCGCCGCGAGTCCTTCCTCTATCGCTCCGACTCAGATTTCGACCTCTCGCCCAAAGCTATGTCCCGCAACTCCTCCACGGCCAGTGAGCTACATGGAGAAGACATGATTGTGACACCATTTGCACAGGTGCTTGCCAGTCTCCGAACAGTCAGAAGCAATTTTGCCTACATAACTCATCTGCAAGATCGACCCAACAGGCGACCATCAGGCAGcaaccctccctccatacctacccACACCAAGTCAAGCATAACAGACGAGCCCTACCAGAAGCTGGCCATGGAGACGCTGGAGGAGCTGGACTGGTGTCTGGACCAGCTGGAGACCCTGCAGACCCGTCACTCAGTCAGTGAGATGGCTTCCAACAagTTCAAAAGGATGTTGAACAGAGAGCTCACCCAGTTGTCAGAAACCAGCCGGTCAGGAAACCAAGTCTCAGAGTTTATCGCCAACACTTTCCTAGaaaagcagCATGATGTGGAGATTATGTCTGGGCCTCCTAAGGAGAAAGACAAGAAGAAGAAGCGGCCCATGTCCCAGATCGTTGCAGTGAAGAAGCCtgccctcagccccagcctcaccCCCACCCAGATCCCCCGTTTCGGGGTCACCACCCTCCAGGAGGGCTTATTGGCCACGGAATTTGAGGAGATCAACAGATGGGGTCTAGATATTTTCAAGATCGCTGAATACTCGGGGAATCGGCCTTTGACAGTGGTCATGTACTCCATTTTCCAGGAGCGAGAGCTGCTGAAAAACTTTAAGATCCCAGCCGACACCTTCATCACCTTCATGATGACCCTGGAGGACCACTACCACGCCGACGTGGCCTACCACAACAACATCCACGCTGCCGACGTGGTACAGTCCACCCAcgttctcctctccacccctgccCTGGAGGCTGTCTTCACTGACCTGGAGATCATGGCTGCTCTGTTTAGCAGTGCTATACACGATGTAGATCACCCCGGAGTGTCCAACCAGTTCCTCATCAACACAAATTCTGAGCTGGCTCTGATGTACAACGACGCTTCTGTCCTGGAGAACCACCACCTGGCTGTGGGCTTCAAGCTGCTACAGGAGGACAACTGTGACATCTTCCAGAGCCTCAGCAAGAAACAGGGGCAGTCCCTCAGGAAGATGGTAATCGACATGGTGTTGGCCACTGACATGTCCAAGCATATGAACTTCCTGGCTGACCTGAAGACCATGGTGGAGACCAAGAAGGTGACCAGTCTTGGAGTGCTGCTGCTGGACAACTACTCAGACCGCATCCAGGTCCTTCAGAACATGGTTCACTGTGCTGACCTCAGTAACCCCACCAAGCCGCTGGAGGTCTACCGTAAGTGGACCGACCGCATCATGGTGGAGTTCTTCAcccagggggacagggagagggacaaggGGATTGAGATCAGCCCTATGTGTGACAAACATAATGCCTCCATCGAGAAGACccagGTGGGATTCATAGACTACATCGTCCACCCTCTGTGGGAGACGTGGGCTGACCTGGTCCACCCTGACGCCCAGGACATCCTGGATACCCTGGAGGACAACCGGGAGTGGTACCAAAGTATGATCCAGCACAGCCCCTCACCCACCCTTGAGGACAGGGATCTTGACGGGGGGCCAGGAGCCCTGGAAGCCACACCGGGGGGATGCTGCGCCTCCGCAGGGGACAAGTTCCAGTTTGAACTcaccctggaggaggaggaggaggagggtgactCAGACCTGGAGAGCCCCCCCGAGGAGGAGACGTCACAGGGGGGAGAGACCTCTAGGAAGACCCCGGCCCTGTCTCTATCCCCAGAGACCAGCAGCAGATACcggcccccctccccccaccctggCCGAGCCCTCAGTCTGGCCACCATGTCGGTTAGGAGCCCCGACCATCTCAGAACGTTGGGCCCCGGGGTGGGCGCGGACGACATAGGCGATAGGGACAGAGAACTGGGCCAGGAAGGCAGTAGTGTAGCTTACCTACGGCTTGGCACGTAACACAAACCTTGGCCCTCCCTTCAACTTATTCCATCCCTGCCTTGGTTTGTGGGTCCCAGCAGCATTTGGACATGCAGGGTGGGATTTCTATCAAGTCTGTAATGACAACAGTTCCTTTACACTGGAGACACCTTAACACTTTTAATATTGTAGAACAAGAAGTATcgttttattctctattttcttCTGTGTGCGAGATAGGACTTTTCAGTCCTGTAGTTGATTCTGGGCGGAAAGTGTCTTAGACTCGAAGGTAGAGAACTGACCACAAGCTAGCCAGTCTCACCAATGTCTCCTGATCGAAGCACGGAATTATACTGAGAAAACAATGTCTTCCTCAAAATGATGGAATATAGATATTCAATGGAATATTGCAAGGATTGTAACATTTTTACAGGGTCTTGGAACTTTTGCACCacacattttgaattcagtcAGCATAAACTAGTATATTTTATTTAGTTTGTCTCTGAGAATTCTGTGAATGTTTTACCAAATCCAGTATGTACCTAAATAGTGAGAGAATTGTAACTTAAACCTCAGGGTATGACGAGATATAAATTATTTTAATGTAGCATGGACGTCTTGGGTACCCCTTAACGGAGACTGCCTGTTTAGAGTTGTGCTACTGATGACAAACAGCTCTTAGAACCTTACCGCTTCAAGTTATgcaaaaatacatatttatttgTCTGGCAACCTCTATTGATCTCAATTGAAAAGTTAATTAATGAATTTGAGAACTAAAGCaatttaaatataaaatatgaaacGAACAGTACCAGTAAATTGTATTTCAAAATCCCGAAGTACTATGGTTGATTGGGGTACCCAATACAAGTTGTTTTAAATCTAGACTAACACCGCTTACACTCATGTTTGTAAAgttgtatgtttctatgtgaTTATGTTTTACGTTGTCACATTTtctatttgatttgaaatggttCCGTTTTGTTGTATATATTGGGTATGTCCTCACCATGGGTGTATTCATTTCACCGATTCTGTTGCAAACAGTTTACTCCAAATGGAAAACTGGTTTCTACTGGAAAAATTCAGGTAGGTCTGTCCCCATTTCGTTCCATTTGCTCGGTTTGCTTTGGTAAACGATTTCCGTTGCAAGACGTAACGAACACACCCCAGGTCTGTTTGTCTCTGAGCTTTATAAGCATCATTGTCAGGGTGACTCCATCATACAGTAACACTTTACAAATTTTGTTGTAGAGGAAGCCCATTCAGTTCTAAAGAACTTGAGCCAAACCATGATTTTAGTGGACAGCCATGGAAGGCTGTAGttcctgtccagaaacaacccctaggccTAACGCCTAGAGCTGAGAGGaatggataggtgtaagcaataggGAGAAAATTCAACCTAGCAGAGAGTGAGGTGGAGACATTGTCATGTAGCTTAAAGGGGcaatgcagtcaaaaacgtgatatCCTGTCttttatatatacatttcaacactgaggttggaataatactgtgaaattgtgacaaTTATGATAATGCACTTTAACAGCTAGTTCAGGTTGCACATCCCTCCCATTAGGCTCCTCGGACCACTctgacagtcctagctaaattcttccTGGAGAAATGGTATTTTGCTAAACCATTTGCTTCTTTTTGAGAATTTTAATTGAAAATGatcttaattgttacccagaaataatttgatattgagataaaaacggctgcattgaaCCTTTTAAACCTATAAAATCCtgtcagatctccacaagtgtggaagggttagtggttgtttctgaACAGGGCTGCAGTGTGGACTAATTAGGGCTTATTCAGTAGTGTGTGATGCTTTGaaagttgcagatagaaatgtaatgaacaGCGTTGATATTATTCCCTGTAGTACACAACAGAAAACCATGTCTGATTTACACAATACTGTACATTCTGTATTGACATTGGATACTTTTTCATTCGCCTGAATAAGCCCCCAATGTCTTGTTTGATTTGTTCTTGAAGGAAACTAGTTTATAGGGAAAATCTTTGGAATTTGCGCAAAATTTGCCAACCTAAGTCGTTATGAAATGTTGAACAAAGTTCTCTCTGAACTGTTGATTGTAATCATGTCAAAGTTTGACTTTAAAATGTGTTGAGTTTCAGCAATTATCAGTTAGTTATGCTATAATTTTAATGGAATTtgtaataccttgactttatatGTTGGATGTAATGCTTCGATGTagagctctattcaatccgtatcgcagaagttcagcgttacagcgtgattggtatttaaaggcaatgttcctgtaTAACGGAGACTGCacagtaaacgctgcatatgtcggctcaatcagaaGTTACCATCATGTCGCgtaatctgtaacgcttcagcgatacagattgaacaGGGGGCCCTTATGCTCTGCTCTTCACAGGGCTATAGCttttacctacagtatgtgaatgtCAATTGACCACAAACATCAATTTTCAACGTTAATTTATATTATTGCGTTCGCTGATTGCACCCTAATTTTTAAGTTAAACCAATACTGTACAACTTAACTAGCCCCTGCCAAATATAAGTACACTgaacatttttttccccccatacGCTCAAAAGGCTTCTCAAATGTCTTatctctcctttgccaagataatcctgacaggtgaggcatatcaagaagctgattaaatggcATGATAATTTATTGTGCTGGGCACAATAAAGGCcactataaaatgtgcagttttctcACAACATAATGTCACACAAGTTTAGagtgagtgtgcaattggcatgctgactgcagtaacgtccaacagagctgttgccagagaattgaatgttaatttctctaccataagccgccaccaacgtaattttagagaatttggcagtatgtccaatgggcctcacaaccgtagaacacgtgtaactacgccagcccaggaccgccACATCCGGCTTCTACACCTGTAGGATCGTCTCAGACCAGCTACGCGGACAGCTGatgccactggcacgctggagaagtgtgctcttcacagataaaTCCCAGTTTCAACTTTATCGGGCAGatggtgttgtgtgggtgagcaatttgcagatgtcaacgttgtgaacaaagtGGAGTTATGGTAtttgcaggcataagctacagacaacgaacacaattgcattttatcgatggcaatttgaatgcacagaaataccgtgatgagatcgtgagggccattgtcgtgccattaatctgccgccatcacctcatgtttcagcatgataatgcaaggatctgtacataattcctagaagctaaaaatgtcccagttcttccatggcctgcacagTCACCAGAAATATCACACATTGAGCATATTTGGGATGCTTCGCACAGCTGAAACACagctgtaactcagtaaactctgaaattgttgcgttttatatttttgttcagtgtatataaaaAAGATCACTGAATTATCCTTAATGGAGGACAGTGAAATCTGAAAATAACCAACAAAATTCAACAACAGCTCCAGCATGGTAAACTTGCCTGGGAACTAACACTAAAGTATTTCCCGCTTACTCTTTTCCTGGTAAGGCAGGGGGAAAAGTACACAAGTATTCATAAATAACTTGACCATATTCTATTCACTCATGTTTGGTAATAATAAgcaaacagctcaaataagagcCTTAAATTGTGACTGGAGAGGAGCTGAGCTGTATCGTGGGTAAAACGTACATAAATCAGTGTCATTCAGTGTTAAATGTGTTGTCTGAGAAGTTAGAATGGTGACTCTTGGTCCCTTTATTGCTTTGCTGAAACTGACATGGTATACCATTACGGTTATTGTTCTGTGTGTCTTTTTTATCCGCAATGTTGGACAGTAGTATATTttgtctgtcaaaatgtaagtacGGTAAGCGATCTTAATTTTTCTGGAGCCAAAAATATTTAACAgtaatttttaaaaacatttctgGAGTTCAGTGAAAATGCCAATAAATTATGGAAACCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18462 lncRNA upstream 9142 16973141 ~ 16973368 (+) True G15743
TU18435 lncRNA upstream 12287 16969905 ~ 16970223 (+) True G15717
TU18425 lncRNA upstream 26050 16956190 ~ 16956460 (+) True G15708
TU18423 lncRNA upstream 29983 16952307 ~ 16952527 (+) True G15706
TU18422 lncRNA upstream 31539 16950385 ~ 16950971 (+) True G15705
TU18638 lncRNA downstream 104026 17240391 ~ 17240617 (+) True G15891
TU18610 lncRNA downstream 121063 17257428 ~ 17257827 (+) True G15865
TU18649 lncRNA downstream 173520 17309885 ~ 17313925 (+) True LOC110494078
TU18676 lncRNA downstream 178201 17314566 ~ 17314970 (+) True G15928
TU18648 lncRNA downstream 208207 17344572 ~ 17347869 (+) True smim7
XM_021567385.2 mRNA upstream 1683 16976867 ~ 16980827 (+) False LOC110493012
XM_021567397.2 mRNA upstream 1683 16976867 ~ 16980827 (+) True LOC110493012
XM_021567371.2 mRNA upstream 16653 16962997 ~ 16965857 (+) False LOC110492876
XM_021567175.2 mRNA upstream 46626 16933388 ~ 16935884 (+) False LOC110492686
XM_036954805.1 mRNA upstream 61565 16916482 ~ 16920945 (+) False LOC110492606
XM_021568167.2 mRNA downstream 107988 17244353 ~ 17256260 (+) True LOC110493709
XM_036955739.1 mRNA downstream 127588 17263953 ~ 17272050 (+) False klhl26
XM_021568458.2 mRNA downstream 127590 17263955 ~ 17272050 (+) False klhl26
XM_036955709.1 mRNA downstream 127619 17263984 ~ 17272050 (+) False klhl26
XM_021568373.2 mRNA downstream 127620 17263985 ~ 17272050 (+) False klhl26
TU18429 other upstream 14720 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 62101 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 401628 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1266828 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 1514522 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 517842 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 839599 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1746358 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 2428484 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 2432420 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile