RNA id: TU18042


Basic Information

Item Value
RNA id TU18042
length 615
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G15372
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16418405 ~ 16419019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGTATTCTTGGATCAGTGTTTGTTTCCTTCTTCTACACCGAACACTCTGCAAAACAAAATACACAGCCCAGCTAGCACATACCGTTCTGAGAATCATATGTTTCTTAGTGCTTGAtgagagtgtggttgtcctatggttattttgcatacaaccttcccacaacattCTGAGAATCATATCGTCAGCTGTAAACTATGAGAATGTGAATGACCATCAGCTACGTGAATATTGACCAACAGTCTATTTTAATATAGTGTCTTCCAGCCGATATACGTTTCTtatgtgggaatttcagtacttcagcgtaACGTTTCTTACCactttcctcatggttctatttaaagtaatgttgTCAAATTGTTTCAGAGAACATTAAGAATCAACGTTcatctgtgggaatttcagtacttcagcataacgtttcttACCactttcctcatggttctatttaaagtaatgttgTCAAATTGTTTCAGAGAACATTAAGAATCAACGTTcatctgtgggaatttcagtacttcattATGACAttttctgcaggtttcctcattctatttaaagtcatgttctcagaacattaagaacactttctATAAAAACAACATGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18044 lncRNA upstream 977 16417221 ~ 16417428 (+) True G15374
TU18038 lncRNA upstream 11005 16406601 ~ 16407400 (+) True G15368
TU18035 lncRNA upstream 13248 16404867 ~ 16405157 (+) True G15365
TU18027 lncRNA upstream 18535 16399611 ~ 16399870 (+) True G15357
TU18020 lncRNA upstream 26004 16392186 ~ 16392401 (+) True G15350
TU18054 lncRNA downstream 20804 16439823 ~ 16440035 (+) True G15384
TU18063 lncRNA downstream 93407 16512426 ~ 16512653 (+) True G15391
TU18096 lncRNA downstream 186085 16605104 ~ 16608677 (+) False G15416
TU18097 lncRNA downstream 186085 16605104 ~ 16725738 (+) True G15416
TU18101 lncRNA downstream 194555 16613574 ~ 16614654 (+) True G15418
XM_036952860.1 mRNA upstream 237423 16157937 ~ 16180982 (+) False LOC110491417
XM_036952900.1 mRNA upstream 237423 16157937 ~ 16180982 (+) False LOC110491417
XM_036952929.1 mRNA upstream 237423 16168382 ~ 16180982 (+) True LOC110491417
XM_036952967.1 mRNA upstream 241724 16157932 ~ 16176681 (+) False LOC110491417
XM_021564067.2 mRNA upstream 442549 15922503 ~ 15975856 (+) True LOC110490588
XM_036953308.1 mRNA downstream 60961 16479980 ~ 16488940 (+) False LOC110491555
XM_021565131.2 mRNA downstream 66455 16485474 ~ 16488940 (+) True LOC110491555
XM_036953427.1 mRNA downstream 136473 16555492 ~ 16562184 (+) True LOC118941197
XM_036953512.1 mRNA downstream 159937 16578956 ~ 16592967 (+) False LOC118941201
XR_005037575.1 mRNA downstream 193581 16612600 ~ 16624198 (+) True LOC118941290
TU17062 other upstream 702723 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 950417 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1456402 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1605781 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 1717675 14700176 ~ 14700730 (+) True G13391
TU18087 other downstream 160067 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 497480 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 544038 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1235188 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1556945 17975964 ~ 17991176 (+) True ccdc124

Expression Profile