RNA id: TU18027


Basic Information

Item Value
RNA id TU18027
length 260
lncRNA type intronic
GC content 0.35
exon number 1
gene id G15357
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16399611 ~ 16399870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttgttttaatgactcaaacctaagtgtttcaaccactagacaaatgtcttgttaacaaactatagttttggcaagtcggttaggacatctactttgtgtatgacaaaagtaatttttccaacaattgtttacagacaagaactcagaaaaaaattgtagacctccacaagtctacaaacgcctgaaggtaccacgttcatctgtacaaataatagtacgcaagtataaaacaccatgggaccatggagccgtcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18020 lncRNA upstream 7210 16392186 ~ 16392401 (+) True G15350
TU18015 lncRNA upstream 11673 16387696 ~ 16387938 (+) True G15345
TU18012 lncRNA upstream 14508 16384591 ~ 16385103 (+) True G15342
TU17996 lncRNA upstream 24828 16374322 ~ 16374783 (+) True G15326
TU17974 lncRNA upstream 38757 16360501 ~ 16360854 (+) True G15304
TU18035 lncRNA downstream 4997 16404867 ~ 16405157 (+) True G15365
TU18038 lncRNA downstream 6731 16406601 ~ 16407400 (+) True G15368
TU18044 lncRNA downstream 17351 16417221 ~ 16417428 (+) True G15374
TU18042 lncRNA downstream 18535 16418405 ~ 16419019 (+) True G15372
TU18054 lncRNA downstream 39953 16439823 ~ 16440035 (+) True G15384
XM_036952860.1 mRNA upstream 218629 16157937 ~ 16180982 (+) False LOC110491417
XM_036952900.1 mRNA upstream 218629 16157937 ~ 16180982 (+) False LOC110491417
XM_036952929.1 mRNA upstream 218629 16168382 ~ 16180982 (+) True LOC110491417
XM_036952967.1 mRNA upstream 222930 16157932 ~ 16176681 (+) False LOC110491417
XM_021564067.2 mRNA upstream 423755 15922503 ~ 15975856 (+) True LOC110490588
XM_036953308.1 mRNA downstream 80110 16479980 ~ 16488940 (+) False LOC110491555
XM_021565131.2 mRNA downstream 85604 16485474 ~ 16488940 (+) True LOC110491555
XM_036953427.1 mRNA downstream 155622 16555492 ~ 16562184 (+) True LOC118941197
XM_036953512.1 mRNA downstream 179086 16578956 ~ 16592967 (+) False LOC118941201
XR_005037575.1 mRNA downstream 212730 16612600 ~ 16624198 (+) True LOC118941290
TU17062 other upstream 683929 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 931623 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1437608 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1586987 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 1698881 14700176 ~ 14700730 (+) True G13391
TU18087 other downstream 179216 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 516629 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 563187 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1254337 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1576094 17975964 ~ 17991176 (+) True ccdc124

Expression Profile