LOC118964896 (LOC106581842)


Basic Information

Item Value
gene id LOC118964896
gene name LOC106581842
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53822057 ~ 53836588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980342.1
GGGTACTGTTTCCACCACTGCACTGGTTCTGTGTATAAACCATTTAGTAATAACTTTTACCCAAAGCGATTTAGCTACGATCATGCTTGCGCTTTCCCGCAAAGTATTGTTCCTAGAGATACGGAATATGCCGCTGTTAAGTGGAAACGTTATTTCCATTTGAGTTGGTTGATCAAGGACCGAAGACTCCGTACGGAAGCTTCTGCAACGAGTCGTCTGTATCAACAGTAGCTCGTTGTGGGACGAAGCAATGGCCATGCACATacacattttacgtatgggtgctCCCGGGAATCGAACTCATAATTCttgcgttgcaagcgccatgctgtaccaactgagctacaggaccacAGACAACAATAGCCAACGAGTTTAAATGAGGATGATCCACATGATCATCAAAGTTTGGAAGGTCAAGTCCAGAAAATGAAGAATGATATCCTGGGTTTAAACTATCCAGAAGATAGTGAAGTGAAGGATCCCCTGCCTCAGATCGAGCTGAAGGCTGTGACAAGGAGAAAAGTTAAGACCAAGAGGAAGACCAGTGCCAACAGGCCCACAGTTGAACAGAGCACTGATACTGATGCAGCTGAGATAGATTTTGTTGATAATCAGAatgatgaagatgaggatgaGGTGAAGAAGGatcccctgcctcagatggaGCCGGATGCCGTGAAGAGAAATAAAGTCAAGACCAAGAGGACCAAGAGAAACAAAGTGGAGCAGATCACTGATACAGATGCAGGTCCCTCTACATCTGTGGAATTCTCTGGGATGACAGTTCAGGGGACATCTCACCAGGGACAATCTAATGAGTGTGTCTCCAGGGCCTGTCAGACCAGGGCTCTTGACCTCCCGCCAATCAATCCGGATGCTTTCAACCCGATTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGCAATGGAGGCAGTTAAGCATTGGCAGGATGGACCCTGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTGACAGAATCAGAGATCCTCTAGCACAAACCTGAAGGTTCGCAAGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCTAAATCAAGCTCCTCTCGTAATGGGTATGTTCAGTCATTCGGTTTCACCTAACTATTCATAACCCAttttgtgaaaatatgttttgttatCTGTGTTACAGTTTACTCTTAATGACCAATTTAATTGATTACTGAATTATGCATTAATGTGACTACAGTATCCACTATTGAATATGGAATGCTGTATTGTTTGCTTTGTATTCTCAAAGGTC

Function

NR:

description
uncharacterized protein LOC110525178

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980342.1 True 1394 mRNA 0.45 7 53822057 53836588

Neighbor

gene id symbol gene type direction distance location
LOC118964334 NA coding downstream 19387 53801029 ~ 53802670 (-)
LOC118964330 NA coding downstream 41875 53778541 ~ 53780182 (-)
LOC110525178 LOC106581842 coding downstream 47513 53761612 ~ 53774544 (-)
LOC110525255 LOC106573039 coding downstream 63319 53713713 ~ 53758738 (-)
LOC110525089 LOC106573055 coding downstream 437581 53373701 ~ 53384476 (-)
LOC118964340 NA coding upstream 3995 53840583 ~ 53841742 (-)
LOC110525263 LOC106581842 coding upstream 17272 53853860 ~ 53868090 (-)
LOC118964352 NA coding upstream 35532 53872120 ~ 53874236 (-)
LOC110525320 snx33 coding upstream 152939 53989527 ~ 54019550 (-)
LOC110525336 pf21a coding upstream 276551 54113139 ~ 54223986 (-)
G58954 NA non-coding downstream 61999 53759692 ~ 53760058 (-)
G58926 NA non-coding downstream 187091 53632654 ~ 53634966 (-)
G58850 NA non-coding downstream 224261 53597123 ~ 53597796 (-)
G58846 NA non-coding downstream 230594 53590934 ~ 53591463 (-)
G58819 NA non-coding downstream 258847 53562953 ~ 53563210 (-)
G59110 NA non-coding upstream 19978 53856566 ~ 53917269 (-)
G59172 NA non-coding upstream 118727 53955315 ~ 53955541 (-)
G59178 NA non-coding upstream 134939 53971527 ~ 53971753 (-)
G59196 NA non-coding upstream 137617 53974205 ~ 53974501 (-)
G59197 LOC101154678 non-coding upstream 138055 53974643 ~ 53974863 (-)
G58958 LOC106581842 other downstream 25043 53791830 ~ 53797014 (-)
G58842 NA other downstream 233287 53588422 ~ 53588770 (-)
G58718 LOC100194703 other downstream 395741 53425964 ~ 53426316 (-)
LOC110525078 LOC105021811 other downstream 483670 53334724 ~ 53338484 (-)
G59978 NA other upstream 892543 54729131 ~ 54737244 (-)
G60516 NA other upstream 1233804 55070392 ~ 55070899 (-)
G60572 NA other upstream 1313653 55150241 ~ 55154258 (-)
G60614 NA other upstream 1356709 55193297 ~ 55193723 (-)
G60624 NA other upstream 1366829 55203417 ~ 55203742 (-)

Expression


Co-expression Network