XLOC_019772 (gabrb4)


Basic Information

Item Value
gene id XLOC_019772
gene name gabrb4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 37787805 ~ 37889727 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038916
GTGTAACTACGGTGCTCACAATGACAACCATCAACACCCACCTGAGGGAGACCCTCCCAAAGATCCCCTATGTGAAAGCCATCGATGTCTACCTCATGGGCTGCTTCGTCTTTGTTTTCCTGGCCCTGCTCGAATATGCCTTTGTAAACTACGTGTTCTTTGGACGGGGACCGCAGCAGCAGAAAAAGATCAACGAAAGGCTAAACAAAGCCAACAACGAGCGTCCCCGCTACGAAGAGAAGCGTCTGAGGGAACAGGTGGACGCTTACGGAAACATTCTTCTCACCACACTGGAGATGAACAATGAGGTGATGCCGTCCGACGTGGGCAGCAGCGTCAGTGACTCACGGAACTCCGTCATGTCCTTTGACAGCTCCGGAGTGCAGTTCCGCAAGCCCATGGGTTCAAGGGATGGGTTCAGCCACCACTCGTTGGACCGCAGTGCCATGCGCAGTCGTGCCAACTGCCGGCTAAGGAGGCGCTCGTCCAAGCTGAAGCTCAAAATTCCCAACTTGACGGATGTTAGCACCATTGACAAGTGGTCCCGGATCATTTTTCCTATCACTTTTGGATTCTTCAACCTTATCTATTGGTTGTATTATGTGAATTGA
>TCONS_00038918
ATGTTGGGTCCTCAAGAAGACAAATTATGTGGAATTGTTTCTGCTCTGGCGGCTTTGTCCTTTGTCTGCTTTGCACAAAGCTCCTCCACTGGAAGTACCGGAATATCTGTGGCCAAGACCACGGTGGACAAATTACTGAAGGGGTATGACATCCGTCTCCGGCCAGACTTTGGAGGTCCTCCAGTCATCGTGGGAATGAGTATAAATATCGCCAGTATTGACTCCATTTCAGAAGTCAACATGGACTACACCATCACCATGTATTTCCAACAGAGCTGGAGGGACAAGCGCTTGGCCTACGCCGAGATGGCGTTGAACCTGACTTTGGACAACCGTGTGGCGGATCAGTTGTGGCTCCCGGATACTTATTTCCTGAACGACAAGAAGAGTTTCTTGCACGGAGTGACGGTGAAAAACCGGATGATCCGCCTCCATCCGGACGGCACAGTTCTGTACGGACTGAGAATAACTACGACGGCAGCTTGCATGATGGACCTGAGACGGTACCCTCTCGATGAGCAAAACTGCACCCTGGAGATCGAGAGCTATGGGTACACCACAGATGATATTGTGTTCTTCTGGCAAGGAGGGGATAATGCCGTAACCGGTGTGGACAAACTGGAACTGCCTCAATTTTCCATTGTGGAGCTACGTCTTGTGTCCAGGGAAGTGAGGTTTACCACAGGTTCATACCCTCGGCTGTCGTTGAGTTTCCGCATCAAGAGAAACATCGGCTACTTTATCCTGCAGACTTACATGCCCTCCATCCTGATCACAATCTTGTCCTGGGTCTCCTTCTGGATTAACTACGATGCCTCTGCGGCTCGGGTGGCCCTGGGTGTAACTACGGTGCTCACAATGACAACCATCAACACCCACCTGAGGGAGACCCTCCCAAAGATCCCCTATGTGAAAGCCATCGATGTCTACCTCATGGGCTGCTTCGTCTTTGTTTTCCTGGCCCTGCTCGAATATGCCTTTGTAAACTACGTGTTCTTTGGACGGGGACCGCAGCAGCAGAAAAAGATCAACGAAAGGCTAAACAAAGCCAACAACGAGCGTCCCCGCTACGAAGAGAAGCGTCTGAGGGAACAGGTGGACGCTTACGGAAACATTCTTCTCACCACACTGGAGATGAACAATGAGGTGATGCCGTCCGACGTGGGCAGCAGCGTCAGTGACTCACGGAACTCCGTCATGTCCTTTGACAGCTCCGGAGTGCAGTTCCGCAAGCCCATGGGTTCAAGGGATGGGTTCAGCCACCACTCGTTGGACCGCAGTGCCATGCGCAGTCGTGCCAACTGCCGGCTAAGGAGGCGCTCGTCCAAGCTGAAGCTCAAAATTCCCAACTTGACGGATGTTAGCACCATTGACAAGTGGTCCCGGATCATTTTTCCTATCACTTTTGGATTCTTCAACCTTATCTATTGGTTGTATTATGTGAATTGA
>TCONS_00038917
ATGTTGGGTCCTCAAGAAGACAAATTATGTGGAATTGTTTCTGCTCTGGCGGCTTTGTCCTTTGTCTGCTTTGCACAAAGCTCCTCCACTGGAAGTACCGGAATATCTGTGGCCAAGACCACGGTGGACAAATTACTGAAGGGGTATGACATCCGTCTCCGGCCAGACTTTGGAGGTCCTCCAGTCATCGTGGGAATGAGTATAAATATCGCCAGTATTGACTCCATTTCAGAAGTCAACATGGACTACACCATCACCATGTATTTCCAACAGAGCTGGAGGGACAAGCGCTTGGCCTACGCCGAGATGGCGTTGAACCTGACTTTGGACAACCGTGTGGCGGATCAGTTGTGGCTCCCGGATACTTATTTCCTGAACGACAAGAAGAGTTTCTTGCACGGAGTGACGGTGAAAAACCGGATGATCCGCCTCCATCCGGACGGCACAGTTCTGTACGGACTGAGAATAACTACGACGGCAGCTTGCATGATGGACCTGAGACGGTACCCTCTCGATGAGCAAAACTGCACCCTGGAGATCGAGAGCTATGGGTACACCACAGATGATATTGTGTTCTTCTGGCAAGGAGGGGATAATGCCGTAACCGGTGTGGACAAACTGGAACTGCCTCAATTTTCCATTGTGGAGCTACGTCTTGTGTCCAGGGAAGTGAGGTTTACCACAGGTTCATACCCTCGGCTGTCGTTGAGTTTCCGCATCAAGAGAAACATCGGCTACTTTATCCTGCAGACTTACATGCCCTCCATCCTGATCACAATCTTGTCCTGGGTCTCCTTCTGGATTAACTACGATGCCTCTGCGGCTCGGGTGGCCCTGGGTGTAACTACGGTGCTCACAATGACAACCATCAACACCCACCTGAGGGAGACCCTCCCAAAGATCCCCTATGTGAAAGCCATCGATGTCTACCTCATGGGCTGCTTCGTCTTTGTTTTCCTGGCCCTGCTCGAATATGCCTTTGTAAACTACGTGTTCTTTGGACGGGGACCGCAGCAGCAGAAAAAGATCAACGAAAGGCTAAACAAAGCCAACAACGAGCGTCCCCGCTACGAAGAGAAGCGTCTGAGGGAACAGGACTCCATTTCAGCGCCGTTTCAAAGCAACACCCTCAGGTCATACACACAGCGAAGAAATCTGTATCTCGAGGAACAAAGAAAAGTCGGGGTGGACGCTTACGGAAACATTCTTCTCACCACACTGGAGATGAACAATGAGGTGATGCCGTCCGACGTGGGCAGCAGCGTCAGTGACTCACGGAACTCCGTCATGTCCTTTGACAGCTCCGGAGTGCAGTTCCGCAAGCCCATGGGTTCAAGGGATGGGTTCAGCCACCACTCGTTGGACCGCAGTGCCATGCGCAGTCGTGCCAACTGCCGGCTAAGGAGGCGCTCGTCCAAGCTGAAGCTCAAAATTCCCAACTTGACGGATGTTAGCACCATTGACAAGTGGTCCCGGATCATTTTTCCTATCACTTTTGGATTCTTCAACCTTATCTATTGGTTGTATTATGTGAATTGA

Function

symbol description
gabrb4 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brainstem; eye; optic tectum; and telencephalon. Orthologous to human GABRQ (gamma-aminobutyric acid type A receptor subunit theta).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-211 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brainstem; eye; optic tectum; and telencephalon. Orthologous to human GABRQ (gamma-aminobutyric acid type A receptor subunit theta).

Ensembl:

ensembl_id ENSDARG00000099096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038916 False 611 mRNA 0.52 2 37787805 37790727
TCONS_00038918 False 1449 mRNA 0.51 9 37787805 37889727
TCONS_00038917 True 1539 mRNA 0.51 10 37787805 37889727

Neighbor

gene id symbol gene type direction distance location
XLOC_019771 mpp1 coding downstream 54234 37668173 ~ 37733571 (-)
XLOC_019770 ndfip1l coding downstream 126235 37637679 ~ 37661570 (-)
XLOC_019769 NA coding downstream 155097 37594351 ~ 37632708 (-)
XLOC_019768 NA coding downstream 205691 37578746 ~ 37582114 (-)
XLOC_019767 fam114a2 coding downstream 352643 37423717 ~ 37435162 (-)
XLOC_019773 FO704750.1 coding upstream 25466 37915193 ~ 37933833 (-)
XLOC_019774 PRRG3 coding upstream 51620 37941347 ~ 37963141 (-)
XLOC_019775 ripply1 coding upstream 77206 37966933 ~ 37973819 (-)
XLOC_019776 rbm41 coding upstream 107095 37996822 ~ 38031138 (-)
XLOC_019777 BX530030.1 coding upstream 173470 38063197 ~ 38063314 (-)
XLOC_019765 BX649250.1 non-coding downstream 714725 37072951 ~ 37073080 (-)
XLOC_019757 NA non-coding downstream 1732398 36054484 ~ 36055407 (-)
XLOC_019755 NA non-coding downstream 2137709 35645538 ~ 35650096 (-)
XLOC_019779 NA non-coding upstream 567556 38457283 ~ 38463146 (-)
XLOC_019782 NA non-coding upstream 739581 38629308 ~ 38632907 (-)
XLOC_019791 CU442763.1 non-coding upstream 1377498 39267225 ~ 39267306 (-)
XLOC_019793 NA non-coding upstream 1438376 39328103 ~ 39337096 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_02315449_02344137 GABRQ, GABRB4 coding CI01000040 null 2315449 ~ 2344313 (+)
bowfin (Amia calva) AMCG00021158 gabrb4,LOC107571379,LOC107713123,LOC108429394,LOC107581896,LOC107661713,LOC103032374,LOC103367791 coding CM030130.1 CM030130.1 7360360 ~ 7390841 (+)