XLOC_019769


Basic Information

Item Value
gene id XLOC_019769
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 37594351 ~ 37632708 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039682
TTTCTAACAGCAGAGTCGTCTGCAAACGTCGAAAAGAAGGATCTGTTATCTAATGTTTGTTTTCAACTGTGAGCTCGAGCCGCTGAACTAATAAAACTCGTCTGACCTGATTTCCTCGGTCGGATGTAGAAGGAAAACTATTCATGTCAACAAGGGCAAATTTCTGTTGTGGTTGCGGCCGGAGACTATTGACAGGCTATATATCATGTCAGCCAAATGAAAGTAATGAATCATGTGGATTATTAACCCTCTATAACTCTGTAAGCAGCGTTCGCCCTTtcactaaacctctaaaataaagcaaatgtgtTTCATTTCAATGCTCAAGAAGAAAAAAGCTCATCTGCATCACAAACTCTGGTGTTCCCTTATTAGTGTgcagtatttcaagagttcacacttggctgatgattgatagtaaagcggTTTGGCATGcagtcccaggagagagccctgagctgatCCGGGGCTTTCATCGGGAGAGTgggggagtctgagctcaggtaggtcttgagagctccGCTGAATTTGTTTGACCTATTGCTtgattattaggggttgccacagtggaattaaccaccaactatgccagcatatgtttatgcCTTGAATGCCAAGTACTAAAACATTCATGCactgtgccaatttggtttatttgaTTCACTTATACTACATATCtgtggactgtgggaggaaaccggagtacctgggaGAAACCCATGAGAGCccggggagaccatgcaaactccacataaaagcgccaactggcccagccgggactcaaacctgtgagctacttgctgtgaggcgacagtgttaaccactgagctgccATGCTGCCCTGTCCTGGGTTACTCTAGAAAAGagagggaggagtaggggtggattcTTCAAGGGAAAGATGACTAAGAAGTAGAGGACCTGAAGGAGAACAGGCAGTACAGAGGGAGCAGAGAGAGTCTAAAACATTGAAGAAGAGGACCTGAAGGAGAACAGGGAGGACAGAGGGAGCAGAGAGAGTCTAAAACATTGAGGAAGAGGTCCTGAAGGAGCACAGGAAGGACAGAGGAGGCAGAGAGGTTGGGGGTGTCAGCCGTAAGCCCAAACTCTGCATGTTTCCTTTACGAATGACAAGGGCTCGAGTGTAACTATCGGTAAATAAAGAGTGGCTGTAAAATTAACTACAAGACGGGTCCAACAGGAATCCCTG
>TCONS_00038908
CTAttatctatatgtgtgtgtgtgtttgtgtttacgtGCTTAATAAACCCTATTTATAAAGGGCAGAAGTTTGCTGAATGAGCATTTAGAGCGACCCAACAATTGTGATTGAGGGAAACGGGCTGGACGTCCCATCACTAAACACTTGCTGATTCATAATCTGCATTTTTATTTGCCCAGTTTGAAATGTTTGGATTAGATCAATTCTTGACCTCATCGCTCAGCTTCCGGGTCCTTCATTAAAGACGCTGAAACATCTGGAGTCTCGTCCTCGTTGTGTCTTGAACAAAGACATGTTCAGACTGTGTTAGTCTGCAGGCCGCTGAGCTGATCTCCAATGAAAAACAGACCTGCTGGCAAATCAAAACATCCTTTCCAGAATTAAACATATTACCACAGGAATAAACAATCCGCTCCGATGACCAGGGATTGCTGTCTGCACTCGGCATGCTGATCGAAAGAAACGATATCACTAGCACTGTGAACACATCTCGCTTTTATATTTGCAGAAGTAGAGGACCTGAAGGAGAACAGGCAGTACAGAGGGAGCAGAGAGAGTCTAAAACATTGatttttttaccattttttaatcatatttttcaTCGTGAACACATCTCGCTTTTATATTTCCTGAAGAGAAGGACCTGGAGGAGAACCGGGAGGACAGAGGGGGCAGAGAGTGTCTAAAACACTGtttttcttttacCACTTTTTTCCATCGTGGACACATCTCGCTCTTTCATATTTGCAGAAGAAGAGGACCTGAAGGAGAACAGGGAGGACAGAGGGAGCAGAGAGAGTCTAAAACATTGGTGTGTGacactataaattaataaaatacagtagtttactgtaaaatattagaTTTTCAGGGTTTCTACAACTTTAACTAAAATTCTGGCAGCTTatcaaaataagttaaagcagcataaaaatatttgttgtcataACACTTTTTACGGTGTAGTTTACTGTAATTGTTTGGTGTTTTGATAGTTTTTACCGCTTTTTTTTACGGTAAACCTTCtggatttttaaatgttgtgaTTGGATATATACCTCAGTCATGTGACA
>TCONS_00038907
CTAttatctatatgtgtgtgtgtgtttgtgtttacgtGCTTAATAAACCCTATTTATAAAGGGCAGAAGTTTGCTGAATGAGCATTTAGAGCGACCCAACAATTGTGATTGAGGGAAACGGGCTGGACGTCCCATCACTAAACACTTGCTGATTCATAATCTGCATTTTTATTTGCCCAGTTTGAAATGTTTGGATTAGATCAATTCTTGACCTCATCGCTCAGCTTCCGGGTCCTTCATTAAAGACGCTGAAACATCTGGAGTCTCGTCCTCGTTGTGTCTTGAACAAAGACATGTTCAGACTGTGTTAGTCTGCAGGCCGCTGAGCTGATCTCCAATGAAAAACAGACCTGCTGGCAAATCAAAACATCCTTTCCAGAATTAAACATATTACCACAGGAATAAACAATCCGCTCCGATGACCAGGGATTGCTGTCTGCACTCGGCATGCTGATCGAAAGAAACGATATCACTAGCACTGTGAACACATCTCGCTTTTATATTTGCAGAAGTAGAGGACCTGAAGGAGAACAGGCAGTACAGAGGGAGCAGAGAGAGTCTAAAACATTGtttttcttttacCACTTTTTTCCATCGTGGACACATCTCGCTCTTTCATATTTGCAGAAGAAGAGGACCTGAAGGAGAACAGGGAGGACAGAGGGAGCAGAGAGAGTCTAAAACATTGGTGTGTGacactataaattaataaaatacagtagtttactgtaaaatattagaTTTTCAGGGTTTCTACAACTTTAACTAAAATTCTGGCAGCTTatcaaaataagttaaagcagcataaaaatatttgttgtcataACACTTTTTACGGTGTAGTTTACTGTAATTGTTTGGTGTTTTGATAGTTTTTACCGCTTTTTTTTACGGTAAACCTTCtggatttttaaatgttgtgaTTGGATATATACCTCAGTCATGTGACA
>TCONS_00039255
ATGAGTCACTGCTGCAGTGCTCTGTGGGCGGAGCTAAGACTGGATCCCCTGCTGCAAACTCAGGTGAGTTTGTGGTGGGAGAAGAGGCCCCTCTCTGCCTTTCCAAGGCTATTAGATGGTCAAAAACAGCAGAACGACCCAGCAAACAAAGCAATTGTGAAGAACCTCCAGTCACTACAATAAAACCCAACCTGCTTTGAATTTGTCTGGCAGACATTTTTTGCGTGTCATAGTTCAATATCTCATCCTACACATGAAATGTGCATTATGTATAACTGAAGGCAAAATTGTTACCCCTCCATTGAATTATTAGTAAAATATCATTcacaggtaacactttacaataaggtccaTTAgtgaatgcatttactaacatgaactaatcatgagcaacacatgtacagcatttattaatcataattcatggcttgaaattaacctttttgcttggtagcaccggtgctcctaactttaaaaatgtaggggCATCAGCCAacatttagtcgcacccaccaattatgagttactacaccgttactacaagtgttatacaaacatatttattgcatttgaaatcaacactaatcaaactaac
>TCONS_00039683
CGAGCCGCTGAACTAATAAAACTCGTCTGACCTGATTTCCTCGGTCGGATGTAGAAGGAAAACTATTCATGTCAACAAGGGCAAATTTCTGTTGTGGTTGCGGCCGGAGACTATTGACAGGCTATATATCATGTCAGCCAAATGAAAGTAATGAATCATGTGGATTATTAACCCTCTATAACTCTGTAAGCAGCGTTCGCCCTTtcactaaacctctaaaataaagcaaatgtgtTTCATTTCAATGCTCAAGAAGAAAAAAGCTCATCTGCATCACAAACTCTGGTGTTCCCTTATTAGTGTgcagtatttcaagagttcacacttggctgatgattgatagtaaagcggTTTGGCATGcagtcccaggagagagccctgagctgatCCGGGGCTTTCATCGGGAGAGTgggggagtctgagctcaggtaggtcttgagagctccGCTGAATTTGTTTGACCTATTGCTtgattattaggggttgccacagtggaattaaccaccaactatgccagcatatgtttatgcCTTGAATGCCAAGTACTAAAACATTCATGCactgtgccaatttggtttatttgaTTCACTTATACTACATATCtgtggactgtgggaggaaaccggagtacctgggaGAAACCCATGAGAGCccggggagaccatgcaaactccacataaaagcgccaactggcccagccgggactcaaacctgtgagctacttgctgtgaggcgacagtgttaaccactgagctgccATGCTGCCCTGTCCTGGGTTACTCTAGAAAAGagagggaggagtaggggtggattcTTCAAGGGAAAGATGACTAAGgaaTGTGTTTGCGTGTGCAGACCCTGAACCGTCTCTGCCTTGATCCTGAATGAGTCACTGCTGCAGTGCTCTGTGGGCGGAGCTAAGACTGGATCCCCTGCTGCAAACTCAGTTAAACACACTCGCATGCACGATTTtctccctctctcacacacacacacacacacacacacacactgcatgctGTCACATCCGGCCCTCAGGTCTACAGCGTGTCCTATAATTAGCCGCCTGCACAACTTATGGCCTCAGAATGATTTAACCAAATGCTTCAGAATACCATTCTACTGAGACAAAGACATGGAAAGATGGCTGAAAGAAAAAGGTGGAAGCTGGAGTCTAAACCTAACGTAGTGGCGTGTGCCTTATTACATTGTGGAGATtacaatgtccccacaagtatagcaataccagtcaatTTTGACATCTTTTTGTGTGTTCCCCTATGaggaaaacggctcataaatcacacagaatgaagatGTAAAGATGCAGACTGTTTCCCATGAGGGTTGGGATTATGGTTTAGGTTTGTGTAGGGGTATAGAACACAGAGTGTGCTGTATAAAACCATTACGTCTataggaagtccccataaagatagctgtacaattgtgtgagtgtgtgtgtgtgtgtgtgttttctgaccGTCCTCACAGAGCTCTCccaaaacaaaatgtgtttttgtcattAGGGTGAGTTTGTGGTGGGAGAAGAGGCCCCTCTCTGCCTTTCCAAGGCTATTAGATGGTCAAAAACAGCAGAACGACCCAGCAAACAAAGCAATTGTGAAGAACCTCCAGTCACTACAATAAAACCCAACCTGCTTTGAATTTGTCTGGCAGACATTTTTTGCGTGTCATAGTTCAATATCTCATCCTACACATGAAATGTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:1902911 protein kinase complex cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:1902554 serine/threonine protein kinase complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0019207 kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117731

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039682 False 1210 lncRNA 0.46 4 37594351 37632708
TCONS_00038908 False 1074 lncRNA 0.39 3 37595791 37597916
TCONS_00038907 False 950 lncRNA 0.39 2 37595791 37597916
TCONS_00039255 False 595 lncRNA 0.39 2 37621343 37622520
TCONS_00039683 True 1730 lncRNA 0.45 2 37621675 37632633

Neighbor

gene id symbol gene type direction distance location
XLOC_019768 NA coding downstream 12237 37578746 ~ 37582114 (-)
XLOC_019767 fam114a2 coding downstream 159189 37423717 ~ 37435162 (-)
XLOC_019766 fgfr4 coding downstream 399512 37183124 ~ 37194839 (-)
XLOC_019764 BX649250.2 coding downstream 518809 37049427 ~ 37075542 (-)
XLOC_019765 BX649250.1 coding downstream 521271 37072951 ~ 37073080 (-)
XLOC_019770 ndfip1l coding upstream 4971 37637679 ~ 37661570 (-)
XLOC_019771 mpp1 coding upstream 35465 37668173 ~ 37733571 (-)
XLOC_019772 gabrb4 coding upstream 155097 37787805 ~ 37889727 (-)
XLOC_019773 FO704750.1 coding upstream 282485 37915193 ~ 37933833 (-)
XLOC_019774 PRRG3 coding upstream 308639 37941347 ~ 37963141 (-)
XLOC_019757 NA non-coding downstream 1538944 36054484 ~ 36055407 (-)
XLOC_019755 NA non-coding downstream 1944255 35645538 ~ 35650096 (-)
XLOC_019743 NA non-coding downstream 3947471 33637162 ~ 33646880 (-)
XLOC_019777 BX530030.1 non-coding upstream 430489 38063197 ~ 38063314 (-)
XLOC_019779 NA non-coding upstream 824575 38457283 ~ 38463146 (-)
XLOC_019782 NA non-coding upstream 996600 38629308 ~ 38632907 (-)
XLOC_019791 CU442763.1 non-coding upstream 1634517 39267225 ~ 39267306 (-)
XLOC_019793 NA non-coding upstream 1695395 39328103 ~ 39337096 (-)

Expression


Co-expression Network