cxcl12a (cxcl12a)


Basic Information

Item Value
gene id cxcl12a
gene name cxcl12a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59589595 ~ 59631391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001281354.1
ATGGATTTGAAACTCTTGGCGGTTATGTCTGTGCTTGCTGTGGCGACATACGTTCCTTTCGCACAAGCTAAGCCCATCAGTATGATGGAGAGGTGCTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTACACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTGTGTATCAACCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGAAAGCCAAGCAGACCAACTAG
>TU72644
ACTCGCCCACTGTCACAGTGTGCTCTGGACTCTACACTGAACGGATTACCGGTATCGTTATCGTTCATCATGGATTTGAAACTCTTGGCGGTTATGTCTGTGCTTGCTGTGGCGACATACGTTCCTTTCGCACAAGCTAAGCCCATCAGTATGATGGAGAGGTGCTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTACACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTGTGTATCAACCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGAAAGCCAAGCAGACCAACTAGAGTGCCTGCAGGAAGACCGCCCAACAGAAACAGTGCCAAGTGAAGGTCTGCACTCCtcttgcacagtcttcacattttacTACCTTAAATTTTTATCTAAAAAGGGATCATATTAAAAAGAAACAATTCTACAGATCTACGCAACctacattttcaaagtgaaagaaggTTATATAAAAAAACGAAGATGTCTTCACACCACAGAGATAATACTTGGTGGAAGCGCATTTGTCTGCTattacagctgtgaataattttgaataatattctaccaactttgcacaactcgtaggacaacatactgtatgccattgtttttgtcaaaatagCTCTAAGTCAATACATTTGTTTGGGGATCATTTATGGACAGAAATATTCAAACATTGTCTCTGATTTTCAAGAAAATGTAAGTCAGGtctagaccactcaggaacactcaacaccAAGTGGAAAGCAATTCTGATGTCTTTGACATAAAACATTGTGTAATTGTCTTTCTGAAAAATACTGAGGTAGGTTTTCCTTTAACTTTTTACCTGGAgtttgctcctttcatatttgTTTTGACTTTGATTCCTTCTTTTCGCTTTGTCATACAGGCCAGTAATGTGAAGGGAATGCACTGTTGTTGATCCCTTAGTTTTTTTGTAttgtggcggcagcatcatgttatgggtatgcttgtcatcggcaaggactggggagtttgtcaggatcaaaataaatatgaaagaaGCAAAGCCCAGGTAAAATGTTAGAGGAAAACCTGAATCGGTCTTCTGAAAACCCAATCCTTGGATAGTTTTATTTTTCTGTGGGACAATTACACAATTTGTTATGCCAAACACACACTATAATGGCTTTCTAAGAGGtgttgaatgttcctgaatggtcCATTCTCTCCTGACTTAAATGTGCTTTAAAATTATgagacaaggtttgaatattgctgtccatcaatgattcccaCGCAAATGcactgagcttgagcaattttgacaaaaacaatggacatatgttgccctaagagttgtgaAAGGTTGGTAGAATCTAATTCAAAATATTTacatctgtaatcgctgccaaaggtgcttccaccaacTATTTACTCATTTTGTGTTTTTCAGTCATTTGAAATTTCTTATATcaaatgtggagtaggttgtgtagatcagTAGGAAACAAATCTAATGTAATCCCTTTTTTAGATGTAATTTTAAGGCAAATTGtgaaggggtgtgtagactttcactagcggCTGTATGTAATGTGAGGCGTATAGCGTGTAACATCTACTCACCTGGCACGCACGCTGAACAGCACTTATCCTGTCCATCACGGAACCTTCCAACCCATGGCTTGCCAAAACCACCACCTCTGTTACCAATGCTACCATAACCACCTGTACTACTTATAGAATCCACCCCTATTAGCGCCAAGTGAAATTATATCTGTGCATGTATGTTTTTATCTATGATGTATATACCGTTTTTTTACTATCCTATTTGATTGGTAAAGATTTTTGGAGTTGTTTTGGCCCCTGGCTTCTCTGTCATTTAGGAATTAGAACTGTTCTTTAGGTAGGTATTGATGGGACTGAGAtatggagaggaaggaaaggaagagataATGCGGGAGGATTCATGACAGAATTCACAACTCTCAATCCAACTCTATCAGCTTGTCCTGGAGAGTGTACAAGGTTCAGCAATGCAAAAAAAAAGATCCAAGAGGCATGGGGATGTTCACGTGTGCAGGGCTAGAACACACTAGAACACACTTACAGTATGTCTGCTTAAGAACACACAGGAGTGAATGGACATCCCTGTCTAGTACCGACTCAaccaatattttattttttgtatccAGCCATGCTGGATGTTGAAGTATTTCATATAAAGAGTCTTAATGTGAAGCATAGTCTGTGATGTTATTCTCTGAGCAACTTTGGTAATTAGCAACATTTAGAGTCAGAACTCTGCTTATTGAGCGACCAATAAAAAAGTAGTAGTCCGTAGCCGCGTCATGGTTATGGAAACATTAAAGGTAGTACGTTCAGATTTTATTAAAGGAACAGTTAATCCAGACTACCATAAAGGGAAAGTTCAGTCAGATAACTAACAACCCACGGCTTGCCAACGTCGTAGTTCAGGTTCCCCTTTAATTCTGACATTGACTAGTCCCGTACAGTATGAACTAAAATCCTGGACAACACATGCAGTGGGTTAACCAAATTAAATTTGTTGTCAGACAGACTACCACGTCAATGTGTTATGAAACATTATGGAAATTATAAAGTTTCATATTTAGCAAACCAGACACTATGAAAAGCAAATCTATCAGCAGTTTTAGTGTGCTAGCGTTAGTAGcagtatagtaatagtaatagtagaaaTGGTAATAGTAGATAGATTGGCTTGACTACCTATTGAtgtcatatactgtatgttattttGGATACCGATGCACTTTACATCCAACATATTCATTCATTAACAATACGTAAGTTTAGAATGTTATAATGAGAACAAGAATATGATCCACACTGTTGGTCTACTACAGTTAGTCAACTGTTGTTTTTCTAATTGTCTTTAGTGGTATAATactttacttttactttacttTTTCATATAACAATCTTAAGCATGAGATACATCACATTTTCATTTtgagtgaaaacaaatattataaGAAATATTATATTTTTGTAGTTTTTATACGTCAAACACAAGTTCATATGAAGGTGCTAGAATGTATAATGTCTCCAGATCTTTTCACATGAGCCATTTCAATGTTAAACTAGATTGTTGAGTAAAATGTAATCTTTAAATAAAAAGTATTCATTTTTATGTTTGCATACTTTTTTCAATACTGTAAAAAGTAATAACATAAACTATTGGCAACActacatcaacacatcaacacaacacaggggcggcaggtagccagcccctggttagagggttggacctgtaaccgaaaagttgctggatcgaatccctgagctgacaaagtcaaattctgtcattctgcccctgaacaaggcagttaacccactgtttccgggtaggccgtcattgtaaataagagtgctttactgacttgcctgttTAAATAAAATCAGTTTTTTTTACTCA
>TU72645
ACTCGCCCACTGTCACAGTGTGCTCTGGACTCTACACTGAACGGATTACCGGTATCGTTATCGTTCATCATGGATTTGAAACTCTTGGCGGTTATGTCTGTGCTTGCTGTGGCGACATACGTTCCTTTCGCACAAGCTAAGCCCATCAGTATGATGGAGAGGTGCTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTACACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTGTGTATCAACCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGAAAGCCAAGCAGACCAACTAGAGTGCCTGCAGGAAGACCGCCCAACAGAAACAGTGCCAAGTGAAGGTCTGCACTCCtcttgcacagtcttcacattttacTACCTTAAATTTTTATCTAAAAAGGGATCATATTAAAAAGAAACAATTCTACAGATCTACGCAACctacattttcaaagtgaaagaaggTTATATAAAAAAACGAAGATGTCTTCACACCACAGAGATAATACTTGGTGGAAGCGCATTTGTCTGCTattacagctgtgaataattttgaataatattctaccaactttgcacaactcgtaggacaacatactgtatgccattgtttttgtcaaaatagCTCTAAGTCAATACATTTGTTTGGGGATCATTTATGGACAGAAATATTCAAACATTGTCTCTGATTTTCAAGAAAATGTAAGTCAGGtctagaccactcaggaacactcaacaccAAGTGGAAAGCAATTCTGATGTCTTTGACATAAAACATTGTGTAATTGTCTTTCTGAAAAATACTGAGGTAGGTTTTCCTTTAACTTTTTACCTGGAgtttgctcctttcatatttgTTTTGACTTTGATTCCTTCTTTTCGCTTTGTCATACAGGCCAGTAATGTGAAGGGAATGCACTGTTGTTGATCCCTTAGTTTTTTTGTAttgtggcggcagcatcatgttatgggtatgcttgtcatcggcaaggactggggagtttgtcaggatcaaaataaatatgaaagaaGCAAAGCCCAGGTAAAATGTTAGAGGAAAACCTGAATCGGTCTTCTGAAAACCCAATCCTTGGATAGTTTTATTTTTCTGTGGGACAATTACACAATTTGTTATGCCAAACACACACTATAATGGCTTTCTAAGAGGtgttgaatgttcctgaatggtcCATTCTCTCCTGACTTAAATGTGCTTTAAAATTATgagacaaggtttgaatattgctgtccatcaatgattcccaCGCAAATGcactgagcttgagcaattttgacaaaaacaatggacatatgttgccctaagagttgtgaAAGGTTGGTAGAATCTAATTCAAAATATTTacatctgtaatcgctgccaaaggtgcttccaccaacTATTTACTCATTTTGTGTTTTTCAGTCATTTGAAATTTCTTATATcaaatgtggagtaggttgtgtagatcagTAGGAAACAAATCTAATGTAATCCCTTTTTTAGATGTAATTTTAAGGCAAATTGtgaaggggtgtgtagaCTTCCAACCCATGGCTTGCCAAAACCACCACCTCTGTTACCAATGCTACCATAACCACCTGTACTACTTATAGAATCCACCCCTATTAGCGCCAAGTGAAATTATATCTGTGCATGTATGTTTTTATCTATGATGTATATACCGTTTTTTTACTATCCTATTTGATTGGTAAAGATTTTTGGAGTTGTTTTGGCCCCTGGCTTCTCTGTCATTTAGGAATTAGAACTGTTCTTTAGGTAGGTATTGATGGGACTGAGAtatggagaggaaggaaaggaagagataATGCGGGAGGATTCATGACAGAATTCACAACTCTCAATCCAACTCTATCAGCTTGTCCTGGAGAGTGTACAAGGTTCAGCAATGCAAAAAAAAAGATCCAAGAGGCATGGGGATGTTCACGTGTGCAGGGCTAGAACACACTAGAACACACTTACAGTATGTCTGCTTAAGAACACACAGGAGTGAATGGACATCCCTGTCTAGTACCGACTCAaccaatattttattttttgtatccAGCCATGCTGGATGTTGAAGTATTTCATATAAAGAGTCTTAATGTGAAGCATAGTCTGTGATGTTATTCTCTGAGCAACTTTGGTAATTAGCAACATTTAGAGTCAGAACTCTGCTTATTGAGCGACCAATAAAAAAGTAGTAGTCCGTAGCCGCGTCATGGTTATGGAAACATTAAAGGTAGTACGTTCAGATTTTATTAAAGGAACAGTTAATCCAGACTACCATAAAGGGAAAGTTCAGTCAGATAACTAACAACCCACGGCTTGCCAACGTCGTAGTTCAGGTTCCCCTTTAATTCTGACATTGACTAGTCCCGTACAGTATGAACTAAAATCCTGGACAACACATGCAGTGGGTTAACCAAATTAAATTTGTTGTCAGACAGACTACCACGTCAATGTGTTATGAAACATTATGGAAATTATAAAGTTTCATATTTAGCAAACCAGACACTATGAAAAGCAAATCTATCAGCAGTTTTAGTGTGCTAGCGTTAGTAGcagtatagtaatagtaatagtagaaaTGGTAATAGTAGATAGATTGGCTTGACTACCTATTGAtgtcatatactgtatgttattttGGATACCGATGCACTTTACATCCAACATATTCATTCATTAACAATACGTAAGTTTAGAATGTTATAATGAGAACAAGAATATGATCCACACTGTTGGTCTACTACAGTTAGTCAACTGTTGTTTTTCTAATTGTCTTTAGTGGTATAATactttacttttactttacttTTTCATATAACAATCTTAAGCATGAGATACATCACATTTTCATTTtgagtgaaaacaaatattataaGAAATATTATATTTTTGTAGTTTTTATACGTCAAACACAAGTTCATATGAAGGTGCTAGAATGTATAATGTCTCCAGATCTTTTCACATGAGCCATTTCAATGTTAAACTAGATTGTTGAGTAAAATGTAATCTTTAAATAAAAAGTATTCATTTTTATGTTTGCATACTTTTTTCAATACTGTAAAAAGTAATAACATAAACTATTGGCAACActacatcaacacatcaacacaacacaggggcggcaggtagccagcccctggttagagggttggacctgtaaccgaaaagttgctggatcgaatccctgagctgacaaagtcaaattctgtcattctgcccctgaacaaggcagttaacccactgtttccgggtaggccgtcattgtaaataagagtgctttactgacttgcctgttTAAATAAAATCAGTTTTTTTTACTCA

Function

symbol description
cxcl12a Enables chemoattractant activity. Acts upstream of or within several processes, including fin regeneration; nervous system development; and regulation of cell migration. Predicted to be located in extracellular space. Is expressed in several structures, including brain; mesoderm; myoseptum; neural rod; and sensory system. Human ortholog(s) of this gene implicated in breast carcinoma; diabetic angiopathy; human immunodeficiency virus infectious disease; and type 1 diabetes mellitus. Orthologous to human CXCL12 (C-X-C motif chemokine ligand 12).

NR:

description
chemokine CXCL12a precursor

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0090024 negative regulation of neutrophil chemotaxis biological_process
GO:0001764 neuron migration biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006955 immune response biological_process
GO:2000472 negative regulation of hematopoietic stem cell migration biological_process
GO:0050930 induction of positive chemotaxis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048842 positive regulation of axon extension involved in axon guidance biological_process
GO:0030239 myofibril assembly biological_process
GO:0031101 fin regeneration biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008354 germ cell migration biological_process
GO:0030900 forebrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function
GO:0042056 chemoattractant activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001281354.1 False 297 mRNA 0.51 4 59589664 59628254
TU72644 False 3503 lncRNA 0.38 4 59589595 59631391
TU72645 True 3404 lncRNA 0.44 5 59589595 59631391

Neighbor

gene id symbol gene type direction distance location
cxcf1a cxcf1a coding upstream 103782 59483481 ~ 59485882 (+)
si:ch211-217g15.3 LOC106576876 coding upstream 247388 59340539 ~ 59342276 (+)
erlin1 LOC106576878 coding upstream 289982 59284324 ~ 59299682 (+)
LOC110525756 NA coding upstream 377489 59210006 ~ 59212175 (+)
trnaa-ugc NA coding upstream 527784 59061807 ~ 59061880 (+)
ercc6 ercc6 coding downstream 97364 59725618 ~ 59778737 (+)
drgx LOC106576867 coding downstream 157875 59786129 ~ 59793763 (+)
lrrc18a LOC106576925 coding downstream 294421 59922675 ~ 59927138 (+)
si:ch211-223a10.1 LOC106576865 coding downstream 341258 59969512 ~ 59993651 (+)
LOC110525930 LOC106576864 coding downstream 371156 59999410 ~ 60018695 (+)
G65572 NA non-coding upstream 53703 59535403 ~ 59535961 (+)
G65519 rassf4 non-coding upstream 141856 59439236 ~ 59447808 (+)
G65488 NA non-coding upstream 197174 59391152 ~ 59392490 (+)
G65458 echs1 non-coding upstream 221646 59355120 ~ 59368018 (+)
G65456 NA non-coding upstream 241007 59348355 ~ 59348657 (+)
G65724 NA non-coding downstream 176000 59804254 ~ 59826592 (+)
G66057 NA non-coding downstream 209637 59837891 ~ 59838094 (+)
G66081 NA non-coding downstream 234458 59862712 ~ 59862927 (+)
G66082 NA non-coding downstream 234776 59863030 ~ 59863267 (+)
G66094 NA non-coding downstream 241189 59869443 ~ 59869818 (+)
G65442 NA other upstream 264535 59324636 ~ 59325129 (+)
G64338 NA other upstream 889285 58699296 ~ 58700379 (+)
G64315 NA other upstream 923758 58665334 ~ 58665906 (+)
G64292 NA other upstream 1002079 58586858 ~ 58587585 (+)
G63959 fgfr2 other upstream 1366534 58221522 ~ 58223130 (+)
G66188 NA other downstream 313232 59941486 ~ 59942064 (+)
G67806 LOC106581772 other downstream 1686620 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 2101511 61729765 ~ 61733388 (+)
G70011 NA other downstream 3646709 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 5181335 64809255 ~ 64946164 (+)

Expression


Co-expression Network