LOC110526134


Basic Information

Item Value
gene id LOC110526134
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61091580 ~ 61132005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473891.2
AGCTCGGCCTCCTGATGTCATTGGACCCCTCATAGGTTTACGACAGTGTCAGCTCCCGGCATCTATCGTAGAACAGTTGGAaacagccttgttatgtcctgtactcgtgctcctgggtagcacagagtttttgccttggggaccgagatgtttctcaccatagagctgcctATGATGACAGCTAGCGATGTTAAATGGGCCGGTCTCTCAGGCAGCCTCACGGTCTGGTGAGGGTGGGAGCTCAGAGGATCTGAACCCGAGGTAGAAGCcaccagagagggagacagaacagaggacAAATACGCAGGAACATCTGGATCCAGGGCGTCAAAGACGTTTCTGTTCTGTGTCAGGTCCGGGCTCAACATCTCCAAACAGACCCTCGTTATCAGAGGACGCTTTCTTCGACTTCCACGGCGAGTGACGTATCTCCACGGCTGGTTGGGTCGAGAACAGCTCCGTTCTTCAGGGAATGAGTCGGGGTCTCCCTCCTTCGTTCTCCAGCTCCATTCTCCAGTTGGCAGCCGCACATGTAACATAGAGAAGACCAGCAAGGGGACCCTCAATATCACGCAGGCATGCCCTCACTGTCAGCTGTAAATGGAGCAGGGAGGACACTTGAATCAGAATGTTTGATGAGGGGCCAGAAGCTGATCTCTGCTGCCATGCCCATCAATGTGGCGCTGGCAAAGACCTCACCTCCAGACCTCACCTCCAGCTTCACCCCTTGCCTGCTCACCAACGGTCGTCAATCGGGAGACCGGGATTAGaTGTATCTATGGAACCAGCACTTGGAGACTTGCAAGATGATGTGATGTAGTTCTGACCGACAGAGAGGCTTGATACTGacgtctctgaatggagagagacctggcactcaacACATCCACAATGTGGGACTAGTAATGATACAGTACAGCAGAAATGTCCAGTATTTGCAACACCCTTTCATTCCATGAGTAACTGATATACTCTGCCTATTTATACAGATGGAGAGATCTGTAGATGCTTTTGCCAGACGACAGCCTCGGTCGTTTGATGGGGAGTCTATAATTGAGTAGCTATTATCTGACCTGTTCAAACATTATCATACTACCTGTTTGTGTTTCAGATATTACATATCCTAACTGCCATTGCTAATGGAACAATGACTATGTGTTtatgtgttcacagaaacatgtatTGAGCCAGCACATGGGGAGACTTGCAAGATACGATGAAGTCCAGACTGAGAGACGGGCTTGATAAtgttgtctctgaatggagagagacctggcactttGCATTACAATTTTACTAGACATAACTTTGACTTGTATTGTCTTTTTTTATTATTGAATTGaatggtatcagtcaatatggggagggagaaacccggTGTATTATTCATTCAGGATTAGGGTACTTCATTCAGGATTAGGGTAACAGACCACACAGGAAGTTATGACCACCCTGACATGTTTGCCAAGATAGCCCCATTACCACCAGGCAAAATGTTGATAGGCAAAGTATCTGTATAGACATTGTTGTATTAGCAGAAC
>TU74744
tcgacgGTGAGCATTGGccaactgaagtcggttacgacgcaaaactgcagtcaggtcaagaccctggtgaggacgacgaacacgcagatgagcttccctgagatggtttctgacagtttttgcagaaacccacagtttcatcagctgtctgggaccggttggacatactggcaaattctctaaaatgatgttggaggcagcttatgatgGAGAAATGAACaataaattatctggcaacagctctggtggacatttctgcaggcAGCATGCCAAACGACCGACACTGGAGTCAACCCGCACATTACTAACatGTTCCGAGCTCGGCCTCCTGATGTCATTGGAC

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473891.2 False 1541 mRNA 0.48 3 61130106 61132005
TU74744 True 343 lncRNA 0.44 2 61091580 61130131

Neighbor

gene id symbol gene type direction distance location
prdm8 LOC106576848 coding upstream 628488 60496970 ~ 60501618 (+)
rrp12 rrp12 coding upstream 702395 60403081 ~ 60427711 (+)
LOC110521558 LOC106576852 coding upstream 738480 60374052 ~ 60391626 (+)
LOC110526060 zdhhc16 coding upstream 759917 60301493 ~ 60370189 (+)
lrrfip2 lrrfip2 coding downstream 210100 61342105 ~ 61401807 (+)
LOC110526206 fam83h coding downstream 305602 61437607 ~ 61488427 (+)
LOC110526212 LOC106576837 coding downstream 369009 61501014 ~ 61505305 (+)
herc4 herc4 coding downstream 385948 61517953 ~ 61540937 (+)
LOC110526236 sirt1 coding downstream 417176 61549181 ~ 61561338 (+)
G67460 NA non-coding upstream 109027 61020853 ~ 61021079 (+)
G67445 NA non-coding upstream 121377 61008529 ~ 61008729 (+)
G66487 NA non-coding upstream 570349 60524239 ~ 60559757 (+)
G66480 NA non-coding upstream 618072 60511670 ~ 60512034 (+)
G66475 NA non-coding upstream 624297 60505582 ~ 60505809 (+)
G67592 NA non-coding downstream 108227 61240232 ~ 61240608 (+)
G67593 NA non-coding downstream 108832 61240837 ~ 61241135 (+)
G67594 NA non-coding downstream 109557 61241562 ~ 61241877 (+)
G67595 NA non-coding downstream 111445 61243450 ~ 61245243 (+)
G67567 mrp2 non-coding downstream 115187 61247192 ~ 61263352 (+)
G66188 NA other upstream 1188042 59941486 ~ 59942064 (+)
G65442 NA other upstream 1804977 59324636 ~ 59325129 (+)
G64338 NA other upstream 2429727 58699296 ~ 58700379 (+)
G64315 NA other upstream 2464200 58665334 ~ 58665906 (+)
G64292 NA other upstream 2542521 58586858 ~ 58587585 (+)
G67806 LOC106581772 other downstream 182869 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 597760 61729765 ~ 61733388 (+)
G70011 NA other downstream 2142958 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 3677584 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 4783730 65915581 ~ 65922285 (+)

Expression


Co-expression Network