march5b (march5b)


Basic Information

Item Value
gene id march5b
gene name march5b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63031594 ~ 63075340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573327.2
CTGACGGGCTTGTTATTGTTGGTGACGTAATACGCACCAGGAGTTCCCGTGCGTTACCTCATAGAGAGAGCCAGTCAATTGAGTCAAGCGGTCGCGCCAAAGCGTTAAAAATGAGTTTTTAGCAAACTATTAAACTGAAACCGTAGATGAAGCATCGAGTTGTAAAATCATTAGTTATGACTGCAAAGGAACTGGGTTATTGTTCAAGTTTTAGCTAGTTCATTTCGGTTAGACAAGTTAGccggctagctaacgttaacctcTTCGACTTCGTGCCAACAGAAAAAGCCTCGCCGCTTTCAACAAGGCCAAGCTACCTAACCTGCATATGTAATTAATACACTCAACACGTTTGAGTGTACTGTTGTTTTACTTTTATTGGCCACATGTCGGAAGAGAGCGCATTGGTAatgcaacagaatttggacagGAGCTGCTGGGTGTGCTTCGCAACGGACGAGGATGACCGCACGGCGGAGTGGGTGCGTCCGTGTCGCTGCCGTGGCTCCACCAAGTGGGTCCACCAGGTGTGTCTGCAGCGCTGGGTGGACGAGAAGCAGAGAGGCAACAGCACGGCCCGCGTGGCCTGTCCTCAGTGCAACGCCGAATACCTCATCGTCTTCCCCAAGCTggGGCCGGTGGTGTATGTGCTAGACCTGGCGGACCGGCTAATCTCCAAGGCCTGTCCCTTCACCGCCGCTGGCATCATGGTGGGCTCCATTTACTGGACCGCTGTCACCTACGGGGCCGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGACGTGATGGAGCGGGCAGACCCCCTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTGGGGAAGATGATCCGCTGGGAGGACTACGTGCTGCGCTTCTGGAGGAAGTACTCCAATAAGCTGCAGATCCTCAACAGCATCTTCCCAGgGATTGGGTGTCCAGTGCCTCGTATCCCGGCAGAGGCCAGCCCCCTGGCAGACCACGTGTCAGCCACTAGAATCCTATGTGGCGCTTTGGTCTTTCCCACCATCGCCACCATCGTAGGCAAACTCATGTTCAGCAGCGTCAACTCCAACCTGCAGAGGACCATCCTGGGTGGGATTGCGTTTGTGGCCGTCAAGGGAGCGTTTAAGGTGTACTTCAAACAGCAGCAGTACCAGAGGCAAGCCCACCGCAAGATCCTCAACTTCCCCGAGGCAGAGGAagcctggacagacagacagacacactgacacaaagGGGGAGTGGGTGGAGCGGAACAGTGAACTCTGAGCAGGAACACTGTCGGACAGACACAGGGATCATTGCTGCCCCCTACCTCTTGTACCCCTCTGAGCAGCCTCGCCTCACATTCTGTTTCTGCTCTCTGCAGAGTCATTGTCCTATGCTGCTGACATTTGTGCTGTATGACTATCGCCATGATCTGTTGCGTTTTTAAAACACGTAGACTAATACAGACATGCGcggacgcagacacacacacttatgcatATTGCACACAGGAATGTGACTGCCGCACTGCAGTAGCGAGttgagtatttttttttacataaccaGTGCTTGCTTATTTTTAGATAAATCTGGGACAGGTGTAATTATTAGGCAGGAAAGTTTTAGAAATAAATTGCCAATGTGAATGGTTTAATGAGGAATATTGCTTTCCTGTGTTTTCAGAGAAATAAGAATAAAGTATCTTTATCACTAAGAGATTATTATTTGAAGGAA
>NM_001185035.1
TTCAACAAGGCCAAGCTACCTAACCTGCATATGTAATTAATACACTCAACACGTTTGAGTGTACTGTTGTTTTACTTTTATTGGCCACATGTCGGAAGAGAGCGCATTGGTAatgcaacagaatttggacagGAGCTGCTGGGTGTGCTTCGCAACGGACGAGGATGACCGCACGGCGGAGTGGGTGCGTCCGTGTCGCTGCCGTGGCTCCACCAAGTGGGTCCACCAGGTGTGTCTGCAGCGCTGGGTGGACGAGAAGCAGAGAGGCAACAGCACGGCCCGCGTGGCCTGTCCTCAGTGCAACGCCGAATACCTCATCGTCTTCCCCAAGCTggGGCCGGTGGTGTATGTGCTAGACCTGGCGGACCGGCTAATCTCCAAGGCCTGTCCCTTCACCGCCGCTGGCATCATGGTGGGCTCCATTTACTGGACCGCTGTCACCTACGGGGCCGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGACGTGATGGAGCGGGCAGACCCCCTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTGGGGAAGATGATCCGCTGGGAGGACTACGTGCTGCGCTTCTGGAGGAAGTACTCCAATAAGCTGCAGATCCTCAACAGCATCTTCCCAGGTCAGAAAGGACACATTGgGATTGGGTGTCCAGTGCCTCGTATCCCGGCAGAGGCCAGCCCCCTGGCAGACCACGTGTCAGCCACTAGAATCCTATGTGGCGCTTTGGTCTTTCCCACCATCGCCACCATCGTAGGCAAACTCATGTTCAGCAGCGTCAACTCCAACCTGCAGAGGACCATCCTGGGTGGGATTGCGTTTGTGGCCGTCAAGGGAGCGTTTAAGGTGTACTTCAAACAGCAGCAGTACCAGAGGCAAGCCCACCGCAAGATCCTCAACTTCCCCGAGGCAGAGGAagcctggacagacagacagacacactgacacaaagGGGGAGTGGGTGGAGCGGAACAGTGAACTCTGAGCAGGAACACTGTCGGACAGACACAGGGATCATTGCTGCCCCCTACCTCTTGTACCCCTCTGAGCAGC

Function

NR:

description
membrane-associated ring finger (C3HC4) 5b

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573327.2 False 1746 mRNA 0.51 6 63031594 63075340
NM_001185035.1 True 1081 mRNA 0.58 6 63031979 63075042

Neighbor

gene id symbol gene type direction distance location
LOC110532536 LOC106576798 coding downstream 56730 62954227 ~ 62974864 (-)
LOC110526605 LOC106576802 coding downstream 208526 62751363 ~ 62823068 (-)
LOC110526600 NA coding downstream 364466 62665097 ~ 62667128 (-)
LOC110526585 fignl1 coding downstream 414335 62612936 ~ 62617259 (-)
LOC110526526 LOC106576810 coding downstream 595514 62421910 ~ 62436080 (-)
LOC110526655 LOC106576794 coding upstream 73304 63148644 ~ 63223684 (-)
ccnj ccnj coding upstream 170110 63245450 ~ 63266545 (-)
blnk LOC106576789 coding upstream 218020 63293360 ~ 63325494 (-)
vent LOC106576918 coding upstream 549494 63624834 ~ 63625877 (-)
vox LOC106576785 coding upstream 552895 63628235 ~ 63630418 (-)
G69854 NA non-coding downstream 973 63028262 ~ 63030621 (-)
G69864 NA non-coding downstream 47868 62983464 ~ 62983726 (-)
G69689 NA non-coding downstream 49695 62981658 ~ 62981899 (-)
G69661 NA non-coding downstream 79090 62952124 ~ 62952504 (-)
G69657 NA non-coding downstream 80998 62950327 ~ 62950596 (-)
G69903 LOC106576796 non-coding upstream 3558 63078898 ~ 63079697 (-)
G69980 NA non-coding upstream 152753 63228093 ~ 63228547 (-)
G69981 NA non-coding upstream 153355 63228695 ~ 63228941 (-)
G69982 NA non-coding upstream 155017 63230357 ~ 63230588 (-)
G69983 NA non-coding upstream 155642 63230982 ~ 63231194 (-)
G69210 NA other downstream 613298 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 1049199 61981652 ~ 61983330 (-)
G68736 NA other downstream 1345286 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 2570360 60430184 ~ 60495300 (-)
LOC110525695 LOC106576879 other downstream 3876449 59144373 ~ 59199471 (-)
G70013 NA other upstream 201868 63277208 ~ 63277752 (-)
LOC110526867 LOC100136521 other upstream 1294562 64369803 ~ 64384521 (-)
tjap1 tjap1 other upstream 3743504 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 3919342 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 4311169 67386509 ~ 67389299 (-)

Expression


Co-expression Network