RNA id: XM_021573327.2


Basic Information

Item Value
RNA id XM_021573327.2
length 1746
RNA type mRNA
GC content 0.51
exon number 6
gene id march5b
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63031594 ~ 63075340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACGGGCTTGTTATTGTTGGTGACGTAATACGCACCAGGAGTTCCCGTGCGTTACCTCATAGAGAGAGCCAGTCAATTGAGTCAAGCGGTCGCGCCAAAGCGTTAAAAATGAGTTTTTAGCAAACTATTAAACTGAAACCGTAGATGAAGCATCGAGTTGTAAAATCATTAGTTATGACTGCAAAGGAACTGGGTTATTGTTCAAGTTTTAGCTAGTTCATTTCGGTTAGACAAGTTAGccggctagctaacgttaacctcTTCGACTTCGTGCCAACAGAAAAAGCCTCGCCGCTTTCAACAAGGCCAAGCTACCTAACCTGCATATGTAATTAATACACTCAACACGTTTGAGTGTACTGTTGTTTTACTTTTATTGGCCACATGTCGGAAGAGAGCGCATTGGTAatgcaacagaatttggacagGAGCTGCTGGGTGTGCTTCGCAACGGACGAGGATGACCGCACGGCGGAGTGGGTGCGTCCGTGTCGCTGCCGTGGCTCCACCAAGTGGGTCCACCAGGTGTGTCTGCAGCGCTGGGTGGACGAGAAGCAGAGAGGCAACAGCACGGCCCGCGTGGCCTGTCCTCAGTGCAACGCCGAATACCTCATCGTCTTCCCCAAGCTggGGCCGGTGGTGTATGTGCTAGACCTGGCGGACCGGCTAATCTCCAAGGCCTGTCCCTTCACCGCCGCTGGCATCATGGTGGGCTCCATTTACTGGACCGCTGTCACCTACGGGGCCGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGACGTGATGGAGCGGGCAGACCCCCTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTGGGGAAGATGATCCGCTGGGAGGACTACGTGCTGCGCTTCTGGAGGAAGTACTCCAATAAGCTGCAGATCCTCAACAGCATCTTCCCAGgGATTGGGTGTCCAGTGCCTCGTATCCCGGCAGAGGCCAGCCCCCTGGCAGACCACGTGTCAGCCACTAGAATCCTATGTGGCGCTTTGGTCTTTCCCACCATCGCCACCATCGTAGGCAAACTCATGTTCAGCAGCGTCAACTCCAACCTGCAGAGGACCATCCTGGGTGGGATTGCGTTTGTGGCCGTCAAGGGAGCGTTTAAGGTGTACTTCAAACAGCAGCAGTACCAGAGGCAAGCCCACCGCAAGATCCTCAACTTCCCCGAGGCAGAGGAagcctggacagacagacagacacactgacacaaagGGGGAGTGGGTGGAGCGGAACAGTGAACTCTGAGCAGGAACACTGTCGGACAGACACAGGGATCATTGCTGCCCCCTACCTCTTGTACCCCTCTGAGCAGCCTCGCCTCACATTCTGTTTCTGCTCTCTGCAGAGTCATTGTCCTATGCTGCTGACATTTGTGCTGTATGACTATCGCCATGATCTGTTGCGTTTTTAAAACACGTAGACTAATACAGACATGCGcggacgcagacacacacacttatgcatATTGCACACAGGAATGTGACTGCCGCACTGCAGTAGCGAGttgagtatttttttttacataaccaGTGCTTGCTTATTTTTAGATAAATCTGGGACAGGTGTAATTATTAGGCAGGAAAGTTTTAGAAATAAATTGCCAATGTGAATGGTTTAATGAGGAATATTGCTTTCCTGTGTTTTCAGAGAAATAAGAATAAAGTATCTTTATCACTAAGAGATTATTATTTGAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77331 lncRNA downstream 973 63028262 ~ 63030621 (-) True G69854
TU77344 lncRNA downstream 47868 62983464 ~ 62983726 (-) True G69864
TU77148 lncRNA downstream 49695 62981658 ~ 62981899 (-) True G69689
TU77120 lncRNA downstream 79090 62952124 ~ 62952504 (-) True G69661
TU77116 lncRNA downstream 80998 62950327 ~ 62950596 (-) True G69657
TU77386 lncRNA upstream 3558 63078898 ~ 63079697 (-) True G69903
TU77473 lncRNA upstream 152753 63228093 ~ 63228547 (-) True G69980
TU77474 lncRNA upstream 153355 63228695 ~ 63228941 (-) True G69981
TU77475 lncRNA upstream 155017 63230357 ~ 63230588 (-) True G69982
TU77476 lncRNA upstream 155642 63230982 ~ 63231194 (-) True G69983
XM_036989765.1 mRNA downstream 56730 62954227 ~ 62974864 (-) True LOC110532536
XM_021607715.2 mRNA downstream 208526 62751363 ~ 62823068 (-) True LOC110526605
XM_021607750.2 mRNA downstream 209699 62751363 ~ 62821895 (-) False LOC110526605
XM_021607723.2 mRNA downstream 209701 62751363 ~ 62821893 (-) False LOC110526605
XM_021607731.2 mRNA downstream 210002 62751363 ~ 62821592 (-) False LOC110526605
XM_021607797.2 mRNA upstream 73304 63148644 ~ 63223683 (-) False LOC110526655
XM_036982471.1 mRNA upstream 73304 63148644 ~ 63223683 (-) False LOC110526655
XM_036982482.1 mRNA upstream 76322 63151662 ~ 63223684 (-) True LOC110526655
XM_021607872.2 mRNA upstream 170110 63245450 ~ 63266545 (-) False ccnj
XM_021607923.2 mRNA upstream 218020 63293360 ~ 63313605 (-) False blnk
TU76624 other downstream 613298 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 1049199 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 1345286 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 2570360 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 3876449 59144373 ~ 59155145 (-) True LOC110525695
TU77510 other upstream 201868 63277208 ~ 63277752 (-) True G70013
TU78947 other upstream 1294562 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 3743504 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 3919342 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 4311169 67386509 ~ 67388044 (-) True LOC110527584

Expression Profile