RNA id: TU77510



Basic Information


Item Value
RNA id TU77510
length 545
RNA type TUCP
GC content 0.36
exon number 1
gene id G70013
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63277208 ~ 63277752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctttaaccctcactgtttctggtaatcatagcgaaaccatttattttttaatttttcgttcaccttttacacctgttgttttgggccatccctggctagtttgtcataatccttccattaattggtctagtaattctatcctctcctggaacgtcgcttgtcatgtgaaatgtttaatgtctgctatccctcctgtttcctctgtctcttcttcacaggaggagcctggtgatttgacaggggtgccggaggaatatcacgatctgcgcacggtgttcagtcggtccagggccacctctcttcctccacaccggtcgtatgattgtagtattgatctccttccgggaaccactcccccccggggtagactatactctctgtcggctcccgaacgtaaggctctcgaagattatttgtcttgccgccggtaccatagtcccctcctcctctcccgccggagcggggttttttttttgttaagaagaaggacgggtccctgcgcccctgcatagattatcgagggctgaatgacataacagtgaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77506 lncRNA downstream 5282 63271697 ~ 63271926 (-) True G70009
TU77504 lncRNA downstream 5999 63270817 ~ 63271209 (-) True G70007
TU77501 lncRNA downstream 7660 63269127 ~ 63269548 (-) True G70004
TU77499 lncRNA downstream 9305 63267643 ~ 63267903 (-) True G70002
TU77489 lncRNA downstream 20503 63256313 ~ 63256705 (-) True G69992
TU77660 lncRNA upstream 50301 63328053 ~ 63328315 (-) True G70150
TU77661 lncRNA upstream 54776 63332528 ~ 63332817 (-) True G70151
TU77865 lncRNA upstream 281594 63559346 ~ 63559634 (-) True G70350
TU77867 lncRNA upstream 284776 63562528 ~ 63562908 (-) True G70352
TU77904 lncRNA upstream 338304 63616056 ~ 63616261 (-) True G70385
XM_021607872.2 mRNA downstream 10663 63245450 ~ 63266545 (-) False ccnj
XM_036982482.1 mRNA downstream 53524 63151662 ~ 63223684 (-) True LOC110526655
XM_021607797.2 mRNA downstream 53525 63148644 ~ 63223683 (-) False LOC110526655
XM_036982471.1 mRNA downstream 53525 63148644 ~ 63223683 (-) False LOC110526655
XM_021573327.2 mRNA downstream 201868 63031594 ~ 63075340 (-) False march5b
XM_021607923.2 mRNA upstream 15608 63293360 ~ 63313605 (-) False blnk
XM_021607938.2 mRNA upstream 15608 63293360 ~ 63313606 (-) False blnk
XM_021607915.2 mRNA upstream 15608 63293360 ~ 63313784 (-) False blnk
XM_021607932.2 mRNA upstream 15608 63293360 ~ 63314977 (-) False blnk
XM_021607928.2 mRNA upstream 15608 63293360 ~ 63320198 (-) False blnk
TU76624 other downstream 858912 62411522 ~ 62418296 (-) True G69210
TU76326 other downstream 1294813 61981731 ~ 61982395 (-) True LOC110526417
TU76069 other downstream 1590900 61682278 ~ 61686308 (-) True G68736
TU74240 other downstream 2815974 60430207 ~ 60461234 (-) True LOC110526097
TU72370 other downstream 4122063 59144373 ~ 59155145 (-) True LOC110525695
TU78947 other upstream 1092150 64369902 ~ 64381356 (-) True LOC110526867
TU82292 other upstream 3541092 66818844 ~ 66822816 (-) False tjap1
TU82368 other upstream 3716930 66994682 ~ 67010587 (-) True LOC110527436
TU83185 other upstream 4108757 67386509 ~ 67388044 (-) True LOC110527584
TU83338 other upstream 4391837 67669589 ~ 67681730 (-) False LOC110527687

Expression Profile