LOC110526727 (LOC106576790)


Basic Information

Item Value
gene id LOC110526727
gene name LOC106576790
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63283327 ~ 63292127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607888.2
CCTGTTCAGTGAACAGTAGGCTATTTGGAGAGACAAAGGAAGTGTAGTCTAATCTTGTTATGACTCCCTCGAACAGTAATAACACTGGTATAAACTAATGGAGGGCACTTGTCTCAAAGTAAAGtttaaattgttattttatttcgACTCGCCATATAATTAAACACGCGTAGAAAGTAGACAACGGCCGTATCTCTGTCATGTCGGCTAAAAGCGGTACATGAGCCATTATTCATCCGTTCTGGTCCTCCGCTGAAGAGCTTTCCTGTGCGTAATCCCCGGATGAAGCTGTCATGGCTGCCATTCGCTGAGCTGTCAAGTCTACAAAAGAAACGTAAAAACCAACCGAAGTCTCGAACTATACATCGACGTAGTCCAATTGTATCGGAGCTTTACTCTGCGGGGCCTGAATTGACATGGATCCAGCACATGCTGAATTAGATGTCCCTGCTGGAGGTAATATTAAAGTTATCGATGATGAGGACAAAAATTGGCACAAACGACTCCGTCTCAGGAAAGCTGCCGTTCAGCCCCCAACTATGCAAAGTGAAGATAAGCATGGGCCGAAGAAGATAGAGGACAAGGAGAAAAGCACAGAGCAGAGGTATTTGAAGAAGACACCCTTTAAAACACAAAAGAGTCAACATGTGACTAAGGTTTATGGAAATATACTTAGGTTTAGATGTTTTGAATGCAACGGCAGCACAGAATTCAGCCCTAATGACTTACTGAGGCACTTTCAGGAAACTCACCCAGGAAGCCAACCAATCTTTCCTTGTGACATGTGCAGTTTTATTACACAGGAATTCTCCCACCTTCAAGTTCACCAATTAGGCCACAGAGACACTTTTGTCAGCTGCAACATATGCAATGACAATGTCCAGCACACTCTCTTGCAGCTCACCACACATTTAAACATGCACCACAGCTTGAATGGCCACTACACTTGCGAGAAGTGCAAGTTCTCCAGCAGAGATGTAGGATCATTTTTGGAGCATATGTATCTACATAACATGGAGCCGCAAGCAAGTGGCATTTCTGATCATTCAAATCCTGCTGACCAAGATTTGCAGCGACATCTCATGGCCAAAACAGCACAATTCCCCTTCAGTTGTCAGTTCTGTGACTTTATAGCGCATCGAAAAGGTATCATCACAAAGCACATGGCCACCGTCCATGGTAAAGCGACAAGCCAAAAAAATTCATCATCAAGACTGAAGCACGtggtgacaaggagtacagtgaggGAAAATAACTGGATGTCACAAGGCTGTCTTTCTCTGTCGGGGGAAGGATTCCTGGATAAATATTGCAGACTGTCAAATCCAGAGAGGGCTTTGGAGGAGACCCAGCAACTTTTAGAGAAGTCTGTGCCTGCTGAAGCTCTTAAGACTGTACTTTCAAATGTACCCAAAGCCATCACTTCCTTTTCAAACTGTGACAACTGCATGATATCCAACCCTGGATTCCCAAACACAGGCAAGGACCTCACTGTCCTCATGCTCAAAAACAAGATTGCAGTTCCTCCGAATGGCACTACTGAAGCAATTGCTTTCAAAATTGTGGAAGGCAAAAAAGATTTGGTTCTCAAGGTTACACCATCAGCAACGCAAGAGACCTCTGACACAACAAAGACGTCATTGTGTGTCACTGAGCAGGAATCAGAGAATATTGCTTCTCAAACTAGTGCTGGGGACTCCAATGCAAATGGATGCCAATCAAATTCAAGTATCCCTCCAAAGACCAAGCCACCCAGTTGTCCAGGATCATTCTTGACACCAAATGATGTTGCCACTATTTCAACCCTAAACGAGTTAGTAAAATATGATCAAACTCAAGAAAATAGAGAGAACCAAGAAACAAGGGTTGGCCAAATGCACAGAAATGATGCAGAACCCAAAGATGTAAATCACTGTGAAGATACGGCAGAGGAAATCAAAATGTCGAAGTTGCCAAAGGAGAAAAGTAAAAAAGAGCAAAAATCCTTTCCTGAAACTCTGCGCTCTTCCAAGACTATGGGGGACAAAAAAAGGGTGAGAAAGAAAGTGGTCGGCCCTAAAACTGTAGAGAAAAAATCATCACCAACATTAGAGCTCCTCCTGAAGAAGAACCCAGTCAAGGAAATGCAGTGGATGCCACAAGGTCCTCTTCCCCTGTTAGGACGAGGTTTGCTGAATGATTTCCATAGACTAGAGCACCCACAGAAAACTTTGGAAAAGTCGCATCAATTTCTTAAAAGAGCACTGTCAGCTGAAAATGGCAAAAAGAAGCAGTCCAAATGTCCCAAGACAGACCAGAAACAGAACTCCAAAGTGGTCACTAGGTCGTCAACGTCAGAGGGAGGCCTTATTCCAAACCCTGGGCATTTCAGCCCCAGAGGTAACAACCTTAATAAGATTTTAGTTCCTCCCAATTGCACTACAGAGGCCATGGGTTTAAAAATGGTGGACGGGAAAAAACATTTGGTTCTTAAGGTTATACCATCAACAATGCAAGAGACCTCTGACAAAACAAAGGCATCCTTGCATTCCATTGAGACTAAGGAAGACCACACCACATCTAAAACTTGCACTACGAGCCAGAACAGTTTAGTCGTGGTCGATAATTCTCATGTCCTGGATGGCCAAGATTGTCCAAGGTTAGGCTTACCTCGTGTATCTAATGGAGCCAAATCAGCTGGAAATGATTTGGGCCAGATGACGGAGGAGAAGTTGGAGGCTGTGAACTATGACCCAGAAGGGGTTGGAACTACAGAAGCTCAGGTCACCATGATGTCTCCCTCCCCCATACTCCATTTCCTTACTTCCCCACAAGGTATAACAAACTTGTCAGAGAATCCGGTCGACACTCCAGACATTTGTTTTCAGGACGTTCCTCCCAATACCACGCTAAGAGATGTAGGACAGCAGGAGGGCTTTGACAGGATTTGCCTCTCACCACAGACAAGTGAACAGACAGTTAAAGGAAAAAGGTGGTGTGAACCGTCCACAGAAGACTCTCCTGAGCCACTCTCAAAAGCCTTCAGGAAAGTTGTGGGAGAAGAAGAGGCCTCACTAGCAGCCGCGCATCAATGGGAGCCAGGCCCTAGAGATGTGGAGAGGACCCTGAAGCTGTTGCCATTAAGTCCCACTCAACTCATAACACGTCCAAGAGGAGACCAGCCTGTTGTCGTGCTAAATCACCCAGACACAGACATTCCAGAGGTCAAAAATATAATGGAAACAGTCCACAGGTACAAAGGAGAGGTCCAAAAAGTAGTGCTGTCTCGGAAAACATTGAAGGCCCTTGCAGCCGTGGGTCGTGATATGTTTAGGGCAAATGCCCCGGCGATTGAACGTGTGTGCCCTGAgagcagagtgaaagagagattcATCTTGAAAATGAAGCTGAAAAAGATGAGCAGAAAGAAGTACAAAGTGGTGAACGCAGTCCCGCGCAGCACTGAGCCTCTATTAAGATTTAGCTGCTGGTTTTGTGGCCGAGCCTTCAGTGATCAGGAGGTCTGGATTGGCCATGGCCAGCGCCATCTGATGGAATCTACTAGAGAGTGGGAGAAGCTGGAAAGTGAAAAGTCATAAATGTCACCTACACTGGATGCAAAGTTGAGAAAGGTGCCCCTGTACAAAACCAATGGACAGAAAAGATACTAGATGGAAATTATCTTTAATTTATTAGAGAAATATGTTGCTAATAAGAACTTAATAAGTGTCCCAAATCAATATAACTTAATGTGAGTTCTTCCAAAGTACAGGCCTCAAATAATAGGGCTCTAGTCATTTTTGCATTTTCCGTTGCTCAAATCAAAGTATTTAATTTGAAACCCACTTATGCTTCAGTGCTATCATTGTTTTAGATTGGATGCAATCTATTTGTTGTTTCAGTTATTGTCTAGCCAAGTTGCAATGCTATTTAAGTTGACCAAAGTACACTGTCATAAGGCATTTttcacagaacactgtaataagGACACAAATTAGACACACTCAGAAGCTGAAAATGTAATGTTATACgggtatgtatagtgtgtgtgctaAGATGATTCATTTGGGAGGGGATGGCAGGTTTGCCTTGTTACTAGGCTATACCAACATTGTTTAAAAAGCTATTTTATGTTTATTGCTGATTTGCAGATGTAcactgttttctttttttttctgtgATTGGTCATAGAAAAGAGTGAATGTGTTTGTATGCATATAGTACTTACCAAAAATATTAATGGTTTCAAATCTAGTAATTTTGTTAAGTTAGTCTGAGCTAGTAGCAGGAGTAGTCCAAAGAATATACCTCTTTATAATTTGTATAATATTGTATAGTATGGCTGACTGATGGCATTTGTGCATATATTTGAAATTATAATCTGTTTTTTAATTGCACTATGAACGGACAGTGAATATTTCTTTCCATTACTTCACTTTATGAATCTTATGACAGTCTTGATATGCATTTTCTTGCATGTATCCTTATGTACTGATGATCTCACGGCATCCATGGCAAGGGATACTTTTACAGTAGTTAGTCAGCCCAGGTCGAGGCCCAAATCACAAATACATGTAGCACATCTTTCTGAGCATACCCTTTCCTCTAGTCACCCATCATTTATTTCTTCAGATCAACAGAAAATAACTGGTTTGTAGGAGTATTGATAAGTCGGAGAAAGAAACACAATTCTAACCTAGAAAACATCTGTTTTTCCACCAAGTGCCTGACCTTTTCTGTTCCACAATGAATATGTATTTATCTTGACACACACCTGGTAGAATTATGTGTTGAACCGATCAATAAATACGAATAGTTAGAAAATATATGTGTGATTATTGAACATaaacaggtgtaggatcttagtTTTTCTCGAATGATAAGACACTTTTAATTTAACTGGGGTCCACTTGACCTCCATCAACCTAATGAGCACAACAGTATTATTTGGTGTAAAACTGTAAGTAATTTCTAATTGCTTTCACACACAATGCAAATGCGAAGCACATTTTTGCAAAGCAGCAAATACAACTCTTTACAAATGACTCTAAACTCAGTTGAGTAAATTATGACAAACAAAATTAAACATTTGGTCACAGCTGATACAAATTACTCACATGAACGTGAACCTTTGTGCAAAACTTATTTGCTAAATTGTTCAATCAGCAATCAGTCCTTATTCATGACTAAAAGAGTTCACCTGTTTGAAAGAATTTATTGGAATGTTGTGCAACGATTGATTCATATAACTTTTAATTCGATGACAAGTTGTATGttttgatgtacagttgaagttggaagtttatatacaccttagccaaatacatttaaactcagtttttaactcagtttttattcct
>TU77518
TGttttgatgtacagttgaagttggaagtttatatacaccttagccaaatacatttaaactcagtttttaactcagtttttattcctagtaaaaatccctgtcttaggtcagttaggatgaccactttattttaagaatgtgaaatgtcagaataatagtagagagaatgatttatttcagcttttttgtctttcatcacattcccagtgggtcagaagttaacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgttttgggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagcttgtgttactgagtcaggtttgtagaccttgctcgcacacgcttttcagttctgcccacaattgtctataggattgaggtcagggctttgtgacggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttgtggtcattgtccatttggaagacccatttgcgatcaagctttaacttcctgactgatgtcttgagatgttacttcaatatatccacatcattttcctcctcatgatgccatctattttgtgaagtgcaccagtccctcctgcaacaaagcacccccataacatgatgctgccacagccatgcttcatggttgggatggttggatgtTCCAAGCtacttaaaggcacagtcaacttggaaacttctgacccactggaattgtgatacagtgagttattagtgaaataatctgtctaaacaattgttggacgaattacttgtgtcatgcacaaagtaggtgtcctaaccgacttgccacaactatagtttgttaacaagaaatgtgtggagtggttgaaaaacgagtttcaatgactccaacctaagtgtacgtaaacttccgacttcaactgtaggtagttTATTTTGTGTTATGTATTTAATGTTTTTAGAGTTTTAATGCATTTAGAAAATTAAATGTGTCATTTTCGCCAAAGGGTTTCAGTTTGGGCCTGCGTGTTAATTGTTTTGCAAAGTGAATAATGTTTGAACAAATGTGCTCAAACAATTGAGAAACTGTCATTTTACCTGTATTTTCACCACAAAGTAATCCTGTAGCAACAGGATTAAGGCGTTTTATTCCTTAATGTTGCTTCATTGGTAATTaagctattagctggccaaaattagaccacatgaaaagtgcaatactttTAATACACTGTGTGCAAAACGttaggcatggactctacaaggttgaGTCCAATggttcccatagttgtgtcaagttggctggatttcctttgggtggtggagcattcctgatacacacgggaaactgttgaacgtgaaaaacccagcagcgttgcagttcttcacacatTCAAACTTGTGCGCCAGGCACCTACTAccctaccctgttcaaaggcacttaaatattttgtctttcccattcaccaccctctgaatggcacacatacacaatcaatgtatcaattgtttcaaggcttaaaaatgcttatttaacctgtctccttccctttatctacactgattgacgtggatttaacaggtgacataaataagggatcatTGCTTTCAGCTGGATAaaatgtaacatgtaaagtgtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607888.2 False 5339 mRNA 0.41 3 63283327 63289901
TU77518 True 1680 lncRNA 0.39 2 63289815 63292127

Neighbor

gene id symbol gene type direction distance location
LOC118965245 LOC106576791 coding upstream 37882 63239050 ~ 63245445 (+)
LOC110526701 LOC106576791 coding upstream 44090 63225088 ~ 63239237 (+)
LOC110526678 LOC106576796 coding upstream 137783 63075377 ~ 63145544 (+)
ide LOC106576795 coding upstream 252706 62983943 ~ 63030621 (+)
LOC110526643 LOC106576799 coding upstream 335255 62923989 ~ 62948072 (+)
LOC110526770 LOC106576788 coding downstream 34001 63323902 ~ 63499450 (+)
LOC110526778 LOC106576786 coding downstream 275602 63565503 ~ 63598806 (+)
LOC110526795 NA coding downstream 330336 63620237 ~ 63621429 (+)
LOC118965254 NA coding downstream 691232 63980371 ~ 63998531 (+)
LOC110526877 LOC106576777 coding downstream 1178622 64468523 ~ 64471084 (+)
G70012 NA non-coding upstream 5528 63277369 ~ 63277799 (+)
G70008 NA non-coding upstream 11164 63271844 ~ 63272163 (+)
G70006 NA non-coding upstream 12118 63270908 ~ 63271209 (+)
G70003 NA non-coding upstream 14978 63268145 ~ 63268349 (+)
G69835 NA non-coding upstream 34021 63248967 ~ 63249306 (+)
G70021 LOC106576789 non-coding downstream 10041 63299942 ~ 63313337 (+)
G70028 NA non-coding downstream 32608 63322509 ~ 63322810 (+)
G70034 NA non-coding downstream 37952 63327853 ~ 63328057 (+)
G70035 NA non-coding downstream 40986 63330887 ~ 63331217 (+)
G70267 NA non-coding downstream 220151 63510052 ~ 63510427 (+)
G70011 NA other upstream 8031 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 1549939 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1968075 61314874 ~ 61315252 (+)
G66188 NA other upstream 3341263 59941486 ~ 59942064 (+)
G65442 NA other upstream 3958198 59324636 ~ 59325129 (+)
LOC110526969 stk32c other downstream 1519688 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 2625834 65915581 ~ 65922285 (+)
G73515 NA other downstream 2997778 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3130594 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 3466306 66756207 ~ 66758984 (+)

Expression


Co-expression Network