LOC110526778 (LOC106576786)


Basic Information

Item Value
gene id LOC110526778
gene name LOC106576786
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63565503 ~ 63598806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607970.2
ACTCCTCCCACAGTGCTACGCAAGGCAGCGCTCCTCACAAATCTCACCACGTTCCGATGGAGTGGGGTTTGCATGTCTGTTTCGAGGGATTGAGTCAAAACAAGCTCTGAAAAAAACGGGGCTCAGTTTCCCTAATGTCCTCCTTCAAATTAATTAGTGATGAGAGTGGCTGATGCTCTGAGTGTATTTCTGTGAGGGATAAAGGACGACAGTTTTAGGCTCTTGTAGTCAGCTGCTGGTGTAAAAGTGCAATCCGTTGGTTCATCTGTGACTGAACTCGAGCCAGACCGATGTCTCTCGGAGATTCCATCACTATCGCCGACCTCATGCAAGatGTGCTCTGGACTGGCTGTGATTTCTCCTCCTCATGCTCGATGGCAGACGAAGACAGCCGCTCTGTCCACGTGAGCTTTGATCACAAAGAGATGGCTCTGATCCACAGCTAAACCTGATCCActgctctcctgtctctctgaccgtcccctctcctctgttttcctctTCTCGTCAACCTCCCTCACCATGGCCTGCTTGTTGGTGTCAGTGTTCCTCCTGGTTCTCCAGACTTATGCTGCCCCATCAGAGTTTGTTCAGAGCCTGGATCTGGGCCCTGGACTCACTGCCAACGTCACTCTGTCTCCACCCCCGGGGACTAGCAAACATGCCCCCCACAGCATCATCATTGGGGTGCGCAAGGGGGGGACACGCGCCCTGCTGGAGATGCTAGATATCCACCCTGAGGTCGCTGCCGCTGCCACAGAGGTGCACTTCTTCGACTGGGACGAGAACTACGCCAAGGGCTTTGACTGGTACCGTGAGCTGATGCCCTATTCCTACCCGCACCAGATCACAGTGGAGAAGACGCCAGGCTATTTCACCTCTTCCCTGGCGCCAGAGCGCATCCGTGCCATGAACTCCTCCATCAAGCTGCTGCTGATCCTGCGGGACCCAACTGAACGCGTCGTCTCAGACTACACCCAGGTCTACTTCAACCGCCTGGAGAACCACAAGCCAGTGCAGGCCATTGAGAATCTGCTGGTGCGCAGCGGAGCTCTCAACACCCGCTACAAGGCCATCCAGCGTAGCTTCTACGACGTGCATATGCGGAACTGGCTGCGCCACTTCCCTCTGGAGCAGATCCACATCGTTGATGGGGACACTTTGATCCGGGACCCCCTTCCCGAGCTGCAGAAAGTAGAGCGTTTCCTCAACCTGCCCCCCAGGATAATGTCGTCCAACTTCTACTTCAACCAGACCAAGGGGTTCTTCTGCATCCGGAGTGAGGGGCGAGAACGCTGCCTGCACGAGTCCAAAGGGCGCCCCCACCCGGCTGTCAACAGTACCGTGCTGCAACAGCTACGCTCCTACCTCCGGGAGCACAATCGTAACTTCTACCGCCTGGTGAAGCGCTCCTTTGACTGGCAGTAAGGCAGGGCACCCCTCTTCCTATGTGGACTAGTTCCTCCTGGCCCAGAGAAGACTTAGGAACCATTGCCCTGTTTAAGGACTGACTGACCAGTATTAAAGGGGCAATAGCACTTTACGAACTCTGACACCCAAACACTCCTGTCAATCGCCTTTTACTCTGCTCTGGTGTCAGCAGCGCAGTTCCACATTTACAAAATAAAGCAAGAACTTAAAATATAAACTAAACGTGGAAAAATGGCCAATCTTGATAAGTCATTCTCTGTACTGTACCGAACAAAAGTGACGCAGATTGTGGCAAAACAATTTTGTGAACCTGATGGATTTTTTTTCTGCTTTGTTTGATATTCTTGTACTTGATAATAAATTGTTCTGCTTTAAAAATGTA
>XM_021607977.2
ACTCCTCCCACAGTGCTACGCAAGGCAGCGCTCCTCACAAATCTCACCACGTTCCGATGGAGTGGGGTTTGCATGTCTGTTTCGAGGGATTGAGTCAAAACAAGCTCTGAAAAAAACGGGGCTCAGTTTCCCTAATGTCCTCCTTCAAATTAATTAGTGATGAGAGTGGCTGATGCTCTGAGTGTATTTCTGTGAGGGATAAAGGACGACAGTTTTAGGCTCTTGTAGTCAGCTGCTGGTGTAAAAGTGCAATCCGTTGGTTCATCTGTGACTGAACTCGAGCCAGACCGATGTCTCTCGGAGATTCCATCACTATCGCCGACCTCATGCAAGGATTTTGGTAGGCCCACATCTCTGGAGGGTACATGCAAGCTGTGTCGAGGAAGAAGCAACACCGGGACGTCCATAGAGTTGGAGACTTccgggcctgtattcataaagcttTTCAAGatGTGCTCTGGACTGGCTGTGATTTCTCCTCCTCATGCTCGATGGCAGACGAAGACAGCCGCTCTGTCCACGTGAGCTTTGATCACAAAGAGATGGCTCTGATCCACAGCTAAACCTGATCCActgctctcctgtctctctgaccgtcccctctcctctgttttcctctTCTCGTCAACCTCCCTCACCATGGCCTGCTTGTTGGTGTCAGTGTTCCTCCTGGTTCTCCAGACTTATGCTGCCCCATCAGAGTTTGTTCAGAGCCTGGATCTGGGCCCTGGACTCACTGCCAACGTCACTCTGTCTCCACCCCCGGGGACTAGCAAACATGCCCCCCACAGCATCATCATTGGGGTGCGCAAGGGGGGGACACGCGCCCTGCTGGAGATGCTAGATATCCACCCTGAGGTCGCTGCCGCTGCCACAGAGGTGCACTTCTTCGACTGGGACGAGAACTACGCCAAGGGCTTTGACTGGTACCGTGAGCTGATGCCCTATTCCTACCCGCACCAGATCACAGTGGAGAAGACGCCAGGCTATTTCACCTCTTCCCTGGCGCCAGAGCGCATCCGTGCCATGAACTCCTCCATCAAGCTGCTGCTGATCCTGCGGGACCCAACTGAACGCGTCGTCTCAGACTACACCCAGGTCTACTTCAACCGCCTGGAGAACCACAAGCCAGTGCAGGCCATTGAGAATCTGCTGGTGCGCAGCGGAGCTCTCAACACCCGCTACAAGGCCATCCAGCGTAGCTTCTACGACGTGCATATGCGGAACTGGCTGCGCCACTTCCCTCTGGAGCAGATCCACATCGTTGATGGGGACACTTTGATCCGGGACCCCCTTCCCGAGCTGCAGAAAGTAGAGCGTTTCCTCAACCTGCCCCCCAGGATAATGTCGTCCAACTTCTACTTCAACCAGACCAAGGGGTTCTTCTGCATCCGGAGTGAGGGGCGAGAACGCTGCCTGCACGAGTCCAAAGGGCGCCCCCACCCGGCTGTCAACAGTACCGTGCTGCAACAGCTACGCTCCTACCTCCGGGAGCACAATCGTAACTTCTACCGCCTGGTGAAGCGCTCCTTTGACTGGCAGTAAGGCAGGGCACCCCTCTTCCTATGTGGACTAGTTCCTCCTGGCCCAGAGAAGACTTAGGAACCATTGCCCTGTTTAAGGACTGACTGACCAGTATTAAAGGGGCAATAGCACTTTACGAACTCTGACACCCAAACACTCCTGTCAATCGCCTTTTACTCTGCTCTGGTGTCAGCAGCGCAGTTCCACATTTACAAAATAAAGCAAGAACTTAAAATATAAACTAAACGTGGAAAAATGGCCAATCTTGATAAGTCATTCTCTGTACTGTACCGAACAAAAGTGACGCAGATTGTGGCAAAACAATTTTGTGAACCTGATGGATTTTTTTTCTGCTTTGTTTGATATTCTTGTACTTGATAATAAATTGTTCTGCTTTAAAAATGTA

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607970.2 False 1813 mRNA 0.52 2 63565503 63598806
XM_021607977.2 True 1930 mRNA 0.52 3 63565503 63598806

Neighbor

gene id symbol gene type direction distance location
LOC110526770 LOC106576788 coding upstream 66053 63323902 ~ 63499450 (+)
LOC110526727 LOC106576790 coding upstream 275602 63283327 ~ 63292127 (+)
LOC118965245 LOC106576791 coding upstream 320058 63239050 ~ 63245445 (+)
LOC110526701 LOC106576791 coding upstream 326266 63225088 ~ 63239237 (+)
LOC110526678 LOC106576796 coding upstream 419959 63075377 ~ 63145544 (+)
LOC110526795 NA coding downstream 21431 63620237 ~ 63621429 (+)
LOC118965254 NA coding downstream 382327 63980371 ~ 63998531 (+)
LOC110526877 LOC106576777 coding downstream 869717 64468523 ~ 64471084 (+)
LOC110526912 LOC106576775 coding downstream 1175109 64773915 ~ 64783737 (+)
LOC110526969 stk32c coding downstream 1210449 64809255 ~ 64946164 (+)
G70300 NA non-coding upstream 9654 63555609 ~ 63555849 (+)
G70284 NA non-coding upstream 36437 63524086 ~ 63529066 (+)
G70282 NA non-coding upstream 44544 63520565 ~ 63520959 (+)
G70267 NA non-coding upstream 55076 63510052 ~ 63510427 (+)
G70035 NA non-coding upstream 234286 63330887 ~ 63331217 (+)
G70399 NA non-coding downstream 29462 63628268 ~ 63628595 (+)
G70434 LOC106576784 non-coding downstream 77320 63676126 ~ 63679000 (+)
G70438 NA non-coding downstream 86547 63685353 ~ 63685565 (+)
G70462 NA non-coding downstream 130093 63728899 ~ 63733431 (+)
G70465 NA non-coding downstream 135159 63733965 ~ 63734188 (+)
G70011 NA other upstream 290207 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 1832115 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 2250251 61314874 ~ 61315252 (+)
G66188 NA other upstream 3623439 59941486 ~ 59942064 (+)
G65442 NA other upstream 4240374 59324636 ~ 59325129 (+)
LOC110527164 LOC106576754 other downstream 2316929 65915581 ~ 65922285 (+)
G73515 NA other downstream 2688873 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 2821689 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 3157401 66756207 ~ 66758984 (+)

Expression


Co-expression Network